Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g060470.1.1 | Tomato | nucleus | 72.24 | 73.75 |
| PGSC0003DMT400002024 | Potato | plastid | 59.18 | 52.54 |
| KRH18125 | Soybean | nucleus | 48.16 | 49.17 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 50.2 | 48.81 |
| KRH15991 | Soybean | nucleus | 46.94 | 48.52 |
| KRH53420 | Soybean | nucleus | 47.35 | 46.59 |
| KRH64520 | Soybean | nucleus, plastid | 40.41 | 41.25 |
| Bra025892.1-P | Field mustard | nucleus | 36.73 | 39.13 |
| CDY04618 | Canola | nucleus | 36.73 | 39.13 |
| CDY50839 | Canola | nucleus | 36.73 | 39.13 |
| AT1G21326.1 | Thale cress | nucleus | 37.14 | 38.08 |
| CDY00369 | Canola | nucleus | 34.29 | 35.9 |
| CDY61066 | Canola | nucleus | 34.29 | 35.9 |
| PGSC0003DMT400073800 | Potato | nucleus | 33.06 | 35.37 |
| Bra012276.1-P | Field mustard | plastid | 24.9 | 34.08 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045282 | EnsemblPlantsGene:PGSC0003DMG400017564 | EntrezGene:102602125 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 |
| PFAM:PF05678 | PGSC:PGSC0003DMG400017564 | RefSeq:XP_006363916.1 | SEG:seg | UniParc:UPI00029620BA | UniProt:M1BHD9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Protein MKS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400017564]
Coordinates
chr6:+:43419711..43420624
Molecular Weight (calculated)
27473.2 Da
IEP (calculated)
9.821
GRAVY (calculated)
-0.776
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSENSAGK SPKRELQGPR PTPLKLRKDS HKIKKPPVVP RQHHQLPPHH QTQPQPQPRP PVIIYTVSPK VIHANPSEFM SLVQRLTGPN SRSSSSSISS
101: FPFQENTNNI GAISPAARFA SIENTRTTKG NIKKSQITNC DMEMSDHEEI EINREIERIT SGVFPQGILS PNPASLQPIS SNFFSPPSAG FFHDLSPELN
201: NNRNYFEHSN YLPSPSNFIS PRIILSPSTP SFDLFNNIFD HHREN
101: FPFQENTNNI GAISPAARFA SIENTRTTKG NIKKSQITNC DMEMSDHEEI EINREIERIT SGVFPQGILS PNPASLQPIS SNFFSPPSAG FFHDLSPELN
201: NNRNYFEHSN YLPSPSNFIS PRIILSPSTP SFDLFNNIFD HHREN
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.