Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045282 | Potato | nucleus | 73.75 | 72.24 |
| KRH18125 | Soybean | nucleus | 47.5 | 47.5 |
| KRH15991 | Soybean | nucleus | 46.25 | 46.84 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 48.33 | 46.03 |
| KRH53420 | Soybean | nucleus | 45.42 | 43.78 |
| KRH64520 | Soybean | nucleus, plastid | 40.42 | 40.42 |
| CDY04618 | Canola | nucleus | 36.25 | 37.83 |
| Bra025892.1-P | Field mustard | nucleus | 35.83 | 37.39 |
| CDY50839 | Canola | nucleus | 35.83 | 37.39 |
| AT1G21326.1 | Thale cress | nucleus | 35.83 | 35.98 |
| Solyc11g005720.1.1 | Tomato | nucleus | 33.33 | 34.63 |
| CDY00369 | Canola | nucleus | 33.75 | 34.62 |
| CDY61066 | Canola | nucleus | 33.33 | 34.19 |
| Bra012276.1-P | Field mustard | plastid | 25.0 | 33.52 |
Protein Annotations
| EnsemblPlants:Solyc06g060470.1.1 | EnsemblPlantsGene:Solyc06g060470.1 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 |
| SEG:seg | UniParc:UPI0002766163 | UniProt:K4C6M7 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6:+:38497586..38498308
Molecular Weight (calculated)
26807.5 Da
IEP (calculated)
9.144
GRAVY (calculated)
-0.682
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSENSAGK SPKRELQGPR PTPLKLRKDS HKIKKPPVGP HQHHQLPPHH QPPPPPRPPI IIYTVSPKVI HANPSEFMSL VQRLTGPNST SSSSISSFPF
101: QENISAISPA ARFASIENTR TTRGNIKRSQ ITSCDMEMVN HEEIEISREI ERSCSGVFPQ GILSPNPSSL QPISSNFFSP PSAGFFHDLS PELHHNRNYF
201: EHSSNYLPSP SNFISPTIIL SPSTPSFDLF NNIFDQYREK
101: QENISAISPA ARFASIENTR TTRGNIKRSQ ITSCDMEMVN HEEIEISREI ERSCSGVFPQ GILSPNPSSL QPISSNFFSP PSAGFFHDLS PELHHNRNYF
201: EHSSNYLPSP SNFISPTIIL SPSTPSFDLF NNIFDQYREK
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.