Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g049970.2.1 | |
| Solyc09g014990.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400073800 | Potato | nucleus | 96.1 | 96.94 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 38.1 | 44.44 |
| KRH64076 | Soybean | nucleus | 38.1 | 41.51 |
| KRH59551 | Soybean | plastid | 37.23 | 41.35 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 38.53 | 41.01 |
| KRH53873 | Soybean | nucleus | 38.96 | 40.54 |
| CDX75979 | Canola | nucleus | 36.8 | 40.09 |
| GSMUA_Achr10P... | Banana | nucleus | 35.5 | 40.0 |
| CDX99326 | Canola | nucleus | 36.8 | 39.72 |
| CDY71738 | Canola | nucleus | 37.23 | 39.63 |
| CDX92261 | Canola | nucleus | 36.8 | 39.53 |
| Bra022345.1-P | Field mustard | nucleus | 36.8 | 39.35 |
| Bra037569.1-P | Field mustard | nucleus | 36.36 | 38.71 |
| CDY68488 | Canola | nucleus | 36.36 | 38.71 |
| Bra001716.1-P | Field mustard | nucleus | 35.5 | 38.32 |
| CDX82333 | Canola | nucleus | 35.5 | 38.32 |
| AT3G18690.1 | Thale cress | nucleus | 35.06 | 36.49 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 35.06 | 34.76 |
| Solyc06g060470.1.1 | Tomato | nucleus | 34.63 | 33.33 |
| Os08t0102900-00 | Rice | nucleus | 29.0 | 32.37 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 34.2 | 31.1 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 32.03 | 30.83 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 33.33 | 30.2 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 31.6 | 30.04 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 32.47 | 29.41 |
| Zm00001d016748_P001 | Maize | nucleus | 35.93 | 28.92 |
| Os02t0539500-01 | Rice | nucleus | 34.2 | 28.73 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 31.17 | 28.57 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 29.44 | 27.87 |
| Zm00001d025374_P001 | Maize | plastid | 29.44 | 25.56 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 33.33 | 23.77 |
| EES13183 | Sorghum | nucleus, plastid | 31.17 | 22.86 |
| Zm00001d003743_P001 | Maize | nucleus | 30.3 | 22.22 |
| OQU81546 | Sorghum | nucleus | 32.9 | 21.59 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 30.3 | 21.28 |
| TraesCS2B01G314600.1 | Wheat | plastid | 29.44 | 20.67 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 29.44 | 20.67 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 16.88 | 20.0 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 29.0 | 16.11 |
Protein Annotations
| EnsemblPlants:Solyc11g005720.1.1 | EnsemblPlantsGene:Solyc11g005720.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009870 | GO:GO:0009987 |
| InterPro:VQ | PANTHER:PTHR33143 | PFAM:PF05678 | SEG:seg | UniParc:UPI0002769A8A | UniProt:K4D4I5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Protein MKS1 [Source:Projected from Arabidopsis thaliana (AT3G18690) UniProtKB/Swiss-Prot;Acc:Q8LGD5]
Coordinates
chr11:-:572324..573019
Molecular Weight (calculated)
24001.6 Da
IEP (calculated)
5.572
GRAVY (calculated)
-0.091
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFPPPDFFA GVSDGRPSPT RRELQGPRPA PLKVNKDSYK IKKPPVAPPP HPPPHTAAVA PAATTQNPQT VIIYAVSPKV YHTTVSDFMS VVQRLTGSTT
101: SSMETSTSGS GSGSADGNLS PAAKLASMEK ASSPSTTVPP PAAAAVGMET FDSMDILDIL GNSSVEMCQI PGILSPAPAT LPPVSPPGLF SPFPTDPFMI
201: MLSPSPSTLF SAPLISPSPS ASDLFHPFFD F
101: SSMETSTSGS GSGSADGNLS PAAKLASMEK ASSPSTTVPP PAAAAVGMET FDSMDILDIL GNSSVEMCQI PGILSPAPAT LPPVSPPGLF SPFPTDPFMI
201: MLSPSPSTLF SAPLISPSPS ASDLFHPFFD F
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.