CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94589
KXG21728
KXG33637
OQU78174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18690.1	KXG21728	AT2G30250.1	15990873
AT3G18690.1	KXG21728	AT2G30250.1	21203436
AT3G18690.1	KXG33637	AT2G38470.1	15990873
AT3G18690.1	OQU78174	AT2G38470.1	15990873
AT3G18690.1	EER94589	AT4G01370.1	15990873
AT3G18690.1	EER94589	AT4G01370.1	21203436
AT3G18690.1	EER94589	AT4G01370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025374_P001	Maize	plastid	50.85	67.29
Zm00001d003743_P001	Maize	nucleus	58.81	65.71
HORVU0Hr1G004060.1	Barley	cytosol, plastid	30.97	55.9
TraesCS2D01G296200.1	Wheat	mitochondrion	49.43	52.89
TraesCS2B01G314600.1	Wheat	plastid	49.15	52.58
TraesCS2A01G298100.1	Wheat	mitochondrion	49.15	52.58
GSMUA_Achr10P...	Banana	nucleus	25.28	43.41
GSMUA_Achr6P13020_001	Banana	nucleus	27.84	42.06
KRH43402	Soybean	cytosol, mitochondrion, nucleus, plastid	21.59	38.38
KRH64076	Soybean	nucleus	22.44	37.26
CDX99326	Canola	nucleus	22.16	36.45
CDX92261	Canola	nucleus	22.16	36.28
Bra022345.1-P	Field mustard	nucleus	22.16	36.11
KRH59551	Soybean	plastid	21.31	36.06
CDX75979	Canola	nucleus	21.59	35.85
KRH53873	Soybean	nucleus	22.16	35.14
CDX82333	Canola	nucleus	21.02	34.58
Bra001716.1-P	Field mustard	nucleus	21.02	34.58
Os04t0417600-00	Rice	cytosol, mitochondrion, nucleus	40.62	34.38
CDY68488	Canola	nucleus	21.02	34.1
AT3G18690.1	Thale cress	nucleus	21.31	33.78
CDY71738	Canola	nucleus	20.45	33.18
Solyc11g005720.1.1	Tomato	nucleus	21.59	32.9
PGSC0003DMT400073800	Potato	nucleus	21.02	32.31
Bra037569.1-P	Field mustard	nucleus	19.89	32.26
EES13183	Sorghum	nucleus, plastid	23.3	26.03

Protein Annotations

EnsemblPlants:OQU81546	EnsemblPlantsGene:SORBI_3006G075500	InterPro:VQ	PANTHER:PTHR33143	PANTHER:PTHR33143:SF1	PFAM:PF05678
ProteinID:OQU81546	ProteinID:OQU81546.1	SEG:seg	UniParc:UPI000B8BA731	UniProt:A0A1Z5RDU2	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:+:43980789..43981892

Molecular Weight (calculated)

35616.6 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.385

Length

352 amino acids

Sequence
(BLAST)

001: MLNHSHSRPD SRSPFLHHGH AHAAADTEHH RGAQQGMDPP SSSGRTTPTT PRRQLQGPRP PRLNVRMESH AIKKPSGSGS SGVVPPGGQG HGRPRDHHHP
101: QQPGGRAPVI IYDASPKVIH AKPSEFMALV QRLTGPGAGG SGSATPPDAQ AQQSEAHHHM AFLPPELLLS PSAAMSPAAR LATIERSVRG PMPSSAPAAA
201: TDYDVLDAQT GGLGGGGDDD GTLAAVLGPA LRHPSILSPL PSSLPPAAAS GLFSPLPFDA SSISWLNELS PILRAAAAAA ASTANAGAGA GASSSGGFGP
301: GGVTSNGGGG SRQQPPAYYS DPFVPSPRNL LATPTVPSPA TCAEFFGSLP DL

Best Arabidopsis Sequence Match ( AT1G68450.1 )
(BLAST)

001: MIPTRCNEIN GSRPSSLKLA GESHTIKKTS SCKSKPRPHG RASPVIIYAH SPKVIHTRAE DFMALVQRLT GLDEIIRRNT SESSSSVVTE EVNVGDDNTA
101: APFSQDRTQR QKLTDMPLFT PSSMTLFGSP TQLMYMSPNR TDSFRPLVFK SE

Arabidopsis Description

VQ8VQ motif-containing protein 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CA36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.