CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94589
EES13183
OQU81546

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	EES13183	AT3G18690.1	15990873
AT2G38470.1	OQU81546	AT3G18690.1	15990873
AT2G38470.1	EES13183	AT3G18690.1	18650934
AT2G38470.1	OQU81546	AT3G18690.1	18650934
AT2G38470.1	EES13183	AT3G18690.1	21203436
AT2G38470.1	OQU81546	AT3G18690.1	21203436
AT2G38470.1	EER94589	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043025_P001	Maize	nucleus	91.01	91.17
Zm00001d012482_P001	Maize	nucleus	87.23	81.79
Os01t0826400-01	Rice	extracellular	77.16	77.3
TraesCS3D01G341100.1	Wheat	nucleus	72.84	72.19
TraesCS3B01G379200.1	Wheat	nucleus	71.94	71.56
TraesCS3A01G347500.1	Wheat	nucleus	72.3	71.53
HORVU3Hr1G088200.4	Barley	nucleus, plastid	69.78	64.77
GSMUA_Achr3P09940_001	Banana	nucleus	33.09	50.27
KRH17125	Soybean	nucleus	51.44	49.74
KRH72765	Soybean	nucleus	51.62	49.48
Bra005104.1-P	Field mustard	nucleus	39.39	47.92
OQU78174	Sorghum	nucleus	55.58	47.61
PGSC0003DMT400043204	Potato	nucleus	45.68	47.57
Solyc06g066370.2.1	Tomato	nucleus	45.5	47.29
VIT_06s0004g07500.t01	Wine grape	nucleus	51.26	47.26
KRG98195	Soybean	nucleus	46.04	47.23
Bra000064.1-P	Field mustard	nucleus	39.93	46.93
CDY07729	Canola	nucleus	39.93	46.93
GSMUA_Achr6P32720_001	Banana	nucleus	38.49	46.93
Bra017117.1-P	Field mustard	nucleus	39.03	46.87
CDY14459	Canola	nucleus, plastid	41.01	46.53
KRH30155	Soybean	nucleus	45.68	46.35
CDY65564	Canola	nucleus, plastid	39.21	46.28
CDX91470	Canola	nucleus, plastid	39.57	46.22
CDY69941	Canola	nucleus, plastid	39.39	45.91
CDY18383	Canola	nucleus, plastid	39.57	45.74
KXG21728	Sorghum	nucleus	42.45	45.65
AT2G38470.1	Thale cress	nucleus, plastid	40.47	43.35
CDY48650	Canola	nucleus, plastid	32.01	40.18
GSMUA_Achr8P01790_001	Banana	nucleus	39.57	38.6
EES16036	Sorghum	nucleus	29.5	33.06
EER93417	Sorghum	nucleus	23.02	30.19
EER94675	Sorghum	nucleus	26.44	29.52
KXG36569	Sorghum	nucleus	31.12	28.31
OQU80981	Sorghum	nucleus	30.94	25.11
KXG35872	Sorghum	nucleus	26.08	24.87
KXG26525	Sorghum	nucleus	32.73	24.59
EES14907	Sorghum	nucleus	21.76	21.27

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	UniProt:A0A1B6Q6V3	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009737	GO:GO:0009739
GO:GO:0009753	GO:GO:0009788	GO:GO:0009938	GO:GO:0009987	GO:GO:0043565	GO:GO:0045893
InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG33637	ProteinID:KXG33637	ProteinID:KXG33637.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF76	SMART:SM00774	EnsemblPlantsGene:SORBI_3003G341100	SUPFAM:SSF118290
UniParc:UPI0003C64818	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:66392943..66395715

Molecular Weight (calculated)

59358.8 Da

IEP (calculated)

6.797

GRAVY (calculated)

-0.802

Length

556 amino acids

Sequence
(BLAST)

001: MTTSSSGSIE APAASSRPGS FSFASTSFTD MLGGSADAAA GGASRYKAMT PPSLPLTPSS FFSNIPGGLN PADFLDSPAL LSSSIFPSPT TNAFASQQFS
101: WLTTPGAEQG VKEEQRQSYP DFSFQTAPTT QEAVRTTTTF QPPIPAAPLG EEAYRSQQQQ QQPWGYQQQQ QQPAGMDAGS SQAAYGGAFQ AGSSDAGAMA
201: PHVPASGGYS HQAQRRSSDD GYNWRKYGQK QVKGSENPRS YYKCTFPSCP TKKKVERSLD GQITEIVYKG THNHAKPQNT RRNSGAAAQL LQGGDASEHS
301: FGGTPVATPE NSSASFGDDE VGVGSPRAAN AAGDEFDEDE PDSKRWRKDG DGEGISMAGN RTVREPRVVV QTMSDIDILD DGYRWRKYGQ KVVKGNPNPR
401: SYYKCTTAGC PVRKHVERAS HDLRAVITTY EGKHNHDVPA ARGSAALYRP APPPPPSADN AGHYLAAQPG MAYQTGQQQY GFGGQGSFGL SGGAGAPAQS
501: SGSFAFSSAG FDNPMGSYMS QHQQQQRQND AMHASRAKEE PRDDMSFFPQ SMLYTD

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.