CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94589
KXG21728
KXG33637
OQU78174

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18690.1	KXG21728	AT2G30250.1	15990873
AT3G18690.1	KXG21728	AT2G30250.1	21203436
AT3G18690.1	KXG33637	AT2G38470.1	15990873
AT3G18690.1	OQU78174	AT2G38470.1	15990873
AT3G18690.1	EER94589	AT4G01370.1	15990873
AT3G18690.1	EER94589	AT4G01370.1	21203436
AT3G18690.1	EER94589	AT4G01370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0102900-00	Rice	nucleus	29.52	44.93
Zm00001d034979_P001	Maize	nucleus, plastid	43.81	42.59
TraesCS7A01G326900.1	Wheat	peroxisome	34.29	42.35
TraesCS7D01G323700.1	Wheat	peroxisome	33.33	41.34
TraesCS7B01G227600.1	Wheat	peroxisome	33.02	40.78
GSMUA_Achr7P03200_001	Banana	nucleus	27.62	40.09
KRH43402	Soybean	cytosol, mitochondrion, nucleus, plastid	22.54	35.86
KRH64076	Soybean	nucleus	22.54	33.49
KRH59551	Soybean	plastid	21.9	33.17
KRH53873	Soybean	nucleus	22.54	31.98
PGSC0003DMT400073800	Potato	nucleus	23.17	31.88
CDX75979	Canola	nucleus	21.27	31.6
CDX82333	Canola	nucleus	21.27	31.31
Bra001716.1-P	Field mustard	nucleus	21.27	31.31
Solyc11g005720.1.1	Tomato	nucleus	22.86	31.17
CDX99326	Canola	nucleus	20.95	30.84
CDX92261	Canola	nucleus	20.95	30.7
Bra022345.1-P	Field mustard	nucleus	20.95	30.56
AT3G18690.1	Thale cress	nucleus	21.27	30.18
CDY68488	Canola	nucleus	20.63	29.95
Bra037569.1-P	Field mustard	nucleus	20.63	29.95
CDY71738	Canola	nucleus	20.32	29.49
OQU81546	Sorghum	nucleus	26.03	23.3

Protein Annotations

EnsemblPlants:EES13183	EnsemblPlantsGene:SORBI_3007G002100	EntrezGene:8067060	InterPro:VQ	PANTHER:PTHR33143	PANTHER:PTHR33143:SF7
PFAM:PF05678	ProteinID:EES13183	ProteinID:EES13183.1	RefSeq:XP_002443688.1	SEG:seg	UniParc:UPI0001A876B4
UniProt:C5YLD9	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:218555..220436

Molecular Weight (calculated)

32618.3 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.419

Length

315 amino acids

Sequence
(BLAST)

001: MEQQPQPSSS ATTTSSSSPS SSQRRELQGP RPAPLKVRKD SHKIRKPPAP QPGGGGGPVQ QVRQPVIIYT VSPKVVHAEP GEFMSVVQRL TGARGATASS
101: SLPAPPPGLT TTEPPQHHQI QLTSSSLPFP FLGGHHAHAP SSSSSAQAQL LQPAPAAPHF PFQLHQQQQA PGGPAAQHDH LMVHQLSTAA RLAIEQQQQQ
201: AAADVRLGGG LLPPFPSILS PESLPAIPPS FFSPPAAPAG GNSYPYPGIS LFGGLISPAF PGNETTGGGS MSIAGANHQS VTMSSSPLQE ASPSTVTPSP
301: SAGAYYWGLF NNQQH

Best Arabidopsis Sequence Match ( AT3G18690.1 )
(BLAST)

001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD

Arabidopsis Description

MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.