Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G326900.1 | Wheat | peroxisome | 39.81 | 50.59 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 39.2 | 50.0 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 38.89 | 49.41 |
| EES13183 | Sorghum | nucleus, plastid | 42.59 | 43.81 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 27.47 | 41.01 |
| Os08t0102900-00 | Rice | nucleus | 25.31 | 39.61 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 23.77 | 38.89 |
| KRH59551 | Soybean | plastid | 23.77 | 37.02 |
| CDX99326 | Canola | nucleus | 23.77 | 35.98 |
| CDY68488 | Canola | nucleus | 23.77 | 35.48 |
| CDX92261 | Canola | nucleus | 23.46 | 35.35 |
| Bra022345.1-P | Field mustard | nucleus | 23.46 | 35.19 |
| Bra001716.1-P | Field mustard | nucleus | 23.15 | 35.05 |
| CDX82333 | Canola | nucleus | 23.15 | 35.05 |
| CDY71738 | Canola | nucleus | 23.46 | 35.02 |
| Bra037569.1-P | Field mustard | nucleus | 23.46 | 35.02 |
| KRH64076 | Soybean | nucleus | 22.84 | 34.91 |
| CDX75979 | Canola | nucleus | 22.84 | 34.91 |
| KRH53873 | Soybean | nucleus | 23.77 | 34.68 |
| PGSC0003DMT400073800 | Potato | nucleus | 24.38 | 34.5 |
| AT3G18690.1 | Thale cress | nucleus | 23.46 | 34.23 |
| Solyc11g005720.1.1 | Tomato | nucleus | 23.77 | 33.33 |
| Zm00001d025374_P001 | Maize | plastid | 24.07 | 29.32 |
| Zm00001d016748_P001 | Maize | nucleus | 24.69 | 27.87 |
| Zm00001d003743_P001 | Maize | nucleus | 24.38 | 25.08 |
Protein Annotations
| EMBL:BT042851 | EnsemblPlants:Zm00001d034979_P001 | EnsemblPlants:Zm00001d034979_T001 | EnsemblPlantsGene:Zm00001d034979 | EntrezGene:100274360 | InterPro:VQ |
| PANTHER:PTHR33143 | PANTHER:PTHR33143:SF7 | PFAM:PF05678 | ProteinID:AQK78029.1 | SEG:seg | UniParc:UPI00017B800F |
| UniProt:B4G0G3 | MapMan:35.2 | : | : | : | : |
Description
Protein MKS1
Coordinates
chr6:+:714095..715069
Molecular Weight (calculated)
33691.4 Da
IEP (calculated)
10.097
GRAVY (calculated)
-0.355
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQPQASSS ATTTSPSSSS QRRELQGPRP APLRLHKDSH KIKKPGPPQP QHVGPVQQVR QPVIVYTVSP KVVHAKPSEF MSVVQRLTGA RGHGATATSS
101: SSSSLPAPPP PDLRTAEPHH QVQMTTSSSA PFPFPFLGGQ HVHASSSGQL LAPVAPHFPF QQQQQQAPRG GTASQSQHDD LMIHQLSPAA RFAAIEQAAA
201: SARSSSGVTA TANVVGGGLL APFPSILSPG SLPPRFFSPP APGGNSYWPG ISLLGGLISP AFLGLGSETI VGGGSTSVAS ATHQSVMSSS PFQQEEEASP
301: STVTVAPSPS AGAYYWDLFN NQQH
101: SSSSLPAPPP PDLRTAEPHH QVQMTTSSSA PFPFPFLGGQ HVHASSSGQL LAPVAPHFPF QQQQQQAPRG GTASQSQHDD LMIHQLSPAA RFAAIEQAAA
201: SARSSSGVTA TANVVGGGLL APFPSILSPG SLPPRFFSPP APGGNSYWPG ISLLGGLISP AFLGLGSETI VGGGSTSVAS ATHQSVMSSS PFQQEEEASP
301: STVTVAPSPS AGAYYWDLFN NQQH
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.