Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G323700.1 | Wheat | peroxisome | 94.9 | 95.28 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 74.12 | 74.12 |
| Os08t0102900-00 | Rice | nucleus | 35.69 | 43.96 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 36.47 | 42.86 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 49.41 | 38.89 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 29.8 | 38.38 |
| KRH59551 | Soybean | plastid | 29.8 | 36.54 |
| KRH64076 | Soybean | nucleus | 29.8 | 35.85 |
| CDX75979 | Canola | nucleus | 29.41 | 35.38 |
| CDX99326 | Canola | nucleus | 29.41 | 35.05 |
| AT3G18690.1 | Thale cress | nucleus | 30.2 | 34.68 |
| CDX92261 | Canola | nucleus | 29.02 | 34.42 |
| Bra022345.1-P | Field mustard | nucleus | 29.02 | 34.26 |
| CDX82333 | Canola | nucleus | 28.63 | 34.11 |
| Bra001716.1-P | Field mustard | nucleus | 28.63 | 34.11 |
| Bra037569.1-P | Field mustard | nucleus | 28.63 | 33.64 |
| PGSC0003DMT400073800 | Potato | nucleus | 29.8 | 33.19 |
| CDY71738 | Canola | nucleus | 28.24 | 33.18 |
| CDY68488 | Canola | nucleus | 28.24 | 33.18 |
| EES13183 | Sorghum | nucleus, plastid | 40.78 | 33.02 |
| Solyc11g005720.1.1 | Tomato | nucleus | 29.41 | 32.47 |
| KRH53873 | Soybean | nucleus | 27.84 | 31.98 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 28.24 | 29.63 |
| TraesCS2B01G314600.1 | Wheat | plastid | 29.02 | 22.49 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G227600.1 | EnsemblPlantsGene:TraesCS7B01G227600 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF7 | PFAM:PF05678 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:427821922..427822689
Molecular Weight (calculated)
26486.4 Da
IEP (calculated)
10.099
GRAVY (calculated)
-0.263
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEYSASSSQ RGGGGGRGEL QGPRPAPLRV HKDSHRIRKP PASQVRQPVI IYTVSPKVVH ANPGEFMSVV QRLTGASSSS SSLPPPPQPS LPFPFFPQQS
101: LSSMLPPALP QTLPFPFQLQ ASGPQAHEGA LLQQQHSPAA RLAAVEQASA PAGQNTGVHR GGLPPLPSIL SPVPGSLPAI PPGFFSPPPS GAGGGINLFG
201: ELISPAFHGH GVLTGTTTAG ASPTPMSLQY FPAAAAPSPS TPYYWDLFNN HPNHL
101: LSSMLPPALP QTLPFPFQLQ ASGPQAHEGA LLQQQHSPAA RLAAVEQASA PAGQNTGVHR GGLPPLPSIL SPVPGSLPAI PPGFFSPPPS GAGGGINLFG
201: ELISPAFHGH GVLTGTTTAG ASPTPMSLQY FPAAAAPSPS TPYYWDLFNN HPNHL
001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
Arabidopsis Description
VQ20VQ motif-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS54]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.