Factsheet for TraesCS1B01G088900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G184500.1
TraesCS1B01G192600.3
TraesCS1D01G192200.1
TraesCS2A01G298100.1
TraesCS2B01G314600.1
TraesCS2D01G296200.1
TraesCS5A01G027100.1
TraesCS5B01G026300.1
TraesCS5D01G034800.1
TraesCS7A01G111300.1
TraesCS7A01G326900.1
TraesCS7B01G009200.1
TraesCS7B01G227600.1
TraesCS7D01G106400.1
TraesCS7D01G323700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30250.1	TraesCS7A01G111300.1	AT2G43790.1	15990873
AT2G30250.1	TraesCS7B01G009200.1	AT2G43790.1	15990873
AT2G30250.1	TraesCS7D01G106400.1	AT2G43790.1	15990873
AT2G30250.1	TraesCS2A01G298100.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS2B01G314600.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS2D01G296200.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS5A01G027100.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS5B01G026300.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS5D01G034800.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS7A01G326900.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS7B01G227600.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS7D01G323700.1	AT3G18690.1	15990873
AT2G30250.1	TraesCS1A01G184500.1	AT4G01370.1	15990873
AT2G30250.1	TraesCS1B01G192600.3	AT4G01370.1	15990873
AT2G30250.1	TraesCS1D01G192200.1	AT4G01370.1	15990873

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G070400.1	Wheat	nucleus	88.43	92.05
TraesCS1D01G072900.1	Wheat	nucleus	91.92	90.73
Os05t0343400-01	Rice	nucleus	72.05	67.76
Zm00001d038023_P001	Maize	nucleus	69.43	65.03
Zm00001d010399_P001	Maize	nucleus	69.65	64.06
KXG21728	Sorghum	nucleus	70.74	62.67
AT5G07100.1	Thale cress	nucleus	34.72	51.46
CDY05016	Canola	nucleus	34.72	49.84
Bra028707.1-P	Field mustard	nucleus	34.5	49.53
CDY14055	Canola	nucleus	33.19	47.65
CDY29685	Canola	nucleus	35.37	46.29
Bra021623.1-P	Field mustard	nucleus	35.15	46.0
CDX97834	Canola	nucleus	36.03	45.71
CDY10720	Canola	nucleus	36.46	44.77
Bra018325.1-P	Field mustard	nucleus	36.46	44.77
CDY24017	Canola	nucleus	35.37	42.86
CDX84848	Canola	nucleus	35.15	42.59
CDY02051	Canola	nucleus	25.55	42.24
Bra022786.1-P	Field mustard	nucleus	34.72	42.06
AT2G30250.1	Thale cress	nucleus	36.03	41.98
TraesCS3B01G379200.1	Wheat	nucleus	45.85	37.57
TraesCS1B01G308200.1	Wheat	nucleus, plastid	38.65	34.77
KRH40825	Soybean	nucleus	40.61	34.25
KRH00362	Soybean	nucleus	40.39	34.2
KRH76058	Soybean	nucleus	37.34	33.73
KRH65526	Soybean	nucleus	36.9	33.33
TraesCS5B01G401800.1	Wheat	nucleus	28.6	31.12
TraesCS5B01G108500.1	Wheat	nucleus	30.79	28.48
TraesCS4B01G165900.2	Wheat	nucleus	28.38	26.69
TraesCS2B01G209200.1	Wheat	nucleus	26.64	26.07
TraesCS7B01G136400.2	Wheat	nucleus, plastid	35.59	25.75
TraesCS2B01G217400.2	Wheat	nucleus	33.62	25.08
TraesCS5B01G257300.1	Wheat	nucleus	36.68	24.74
TraesCS2B01G351600.1	Wheat	nucleus	35.81	22.47
TraesCS7B01G185400.2	Wheat	nucleus	24.89	21.84

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS1B01G088900	EnsemblPlants:TraesCS1B01G088900.2
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:87731393..87733651

Molecular Weight (calculated)

49303.0 Da

IEP (calculated)

7.990

GRAVY (calculated)

-0.691

Length

458 amino acids

Sequence
(BLAST)

001: MSSPTGSLDH AGFTFTPPPF ITSFTELLSG SGAGDVEGSP RGFNRGGRAG VPKFKSAQPP SLPISSPASP FSCFSIPAGL SPAELLHSPV LLNYSHILAS
101: PTTGAIPARR YDWQASADLN TFQQDEVGRG DSGLFGFSFH AVKPNATVNA QTNYLPLFKE HQQQQQQQVV EVSNKSSSGD NNKQVEDGYN WRKYGQKQVK
201: GSENPRSYYK CTYNNCSMKK KVERSLADGR ITQIVYKGAH DHPKPPSTRR NSSGCAAVIA EDHTNGSEHS GPTPENSSVT FGDDEADNGA EPETKRRKEH
301: GDNEGSSGGT GACVKPVREP TLVVQTLSDI DILDDGFRWR KYGQKVVKGN PNPRSYYKCT TVGCPVRKHV ERASHDNRAV ITTYEGRHSH DVPVGRGAGA
401: SRALPTSSSS DSSVVVCPAA AGQAPYTLEM LANPAAGHRG YAAKDEPRDD MFVESLLC

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.