Factsheet for TraesCS2B01G217400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G189700.1	Wheat	nucleus	96.91	97.22
HORVU2Hr1G036320.1	Barley	nucleus	96.42	96.26
TraesCS2D01G198100.4	Wheat	nucleus	98.86	95.14
GSMUA_Achr7P25840_001	Banana	nucleus	15.8	39.27
Os07t0583700-01	Rice	nucleus	38.11	37.86
KXG36569	Sorghum	nucleus	37.62	37.81
Bra028971.1-P	Field mustard	nucleus	29.64	37.53
Zm00001d021947_P002	Maize	nucleus	37.46	37.52
Zm00001d006702_P001	Maize	nucleus	37.13	37.38
GSMUA_Achr4P13970_001	Banana	nucleus	30.62	36.65
CDY70490	Canola	nucleus	30.13	35.71
CDX92808	Canola	nucleus	29.64	34.73
KRH49522	Soybean	extracellular, plasma membrane	14.01	34.13
KRG98564	Soybean	nucleus	31.92	33.97
KRH46302	Soybean	nucleus	31.76	33.8
CDX89317	Canola	nucleus	29.32	33.71
TraesCS1B01G088900.2	Wheat	nucleus	25.08	33.62
VIT_19s0090g01720.t01	Wine grape	nucleus	32.25	33.56
CDY46692	Canola	nucleus	28.66	33.52
KRH14276	Soybean	nucleus	31.92	33.5
CDX94303	Canola	nucleus	28.99	33.46
Bra026414.1-P	Field mustard	nucleus	28.99	33.27
GSMUA_Achr3P29850_001	Banana	nucleus	31.11	33.16
CDX97359	Canola	nucleus	28.83	32.96
KRH73864	Soybean	nucleus	31.43	32.82
VIT_12s0057g00550.t01	Wine grape	nucleus	21.34	32.51
AT4G26640.2	Thale cress	nucleus	29.48	32.5
Bra010431.1-P	Field mustard	nucleus	28.83	32.48
VIT_00s0463g00010.t01	Wine grape	nucleus	32.08	32.19
CDY14304	Canola	nucleus	28.66	32.18
PGSC0003DMT400057409	Potato	nucleus	30.94	31.88
Solyc12g014610.1.1	Tomato	nucleus	31.43	31.59
PGSC0003DMT400076670	Potato	nucleus	31.27	31.42
Solyc07g065260.2.1	Tomato	nucleus	30.46	31.38
TraesCS1B01G308200.1	Wheat	nucleus, plastid	24.76	29.86
TraesCS3B01G379200.1	Wheat	nucleus	26.71	29.34
Solyc07g047960.2.1	Tomato	nucleus	19.38	28.81
CDX93073	Canola	nucleus	17.1	28.53
TraesCS5B01G401800.1	Wheat	nucleus	19.38	28.27
PGSC0003DMT400015754	Potato	nucleus	19.22	27.96
TraesCS5B01G108500.1	Wheat	nucleus	22.48	27.88
Solyc12g006170.1.1	Tomato	nucleus	18.57	27.47
TraesCS5B01G257300.1	Wheat	nucleus	29.32	26.51
TraesCS7B01G136400.2	Wheat	nucleus, plastid	27.04	26.22
TraesCS4B01G165900.2	Wheat	nucleus	20.52	25.87
CDY50038	Canola	nucleus	18.08	25.46
TraesCS2B01G351600.1	Wheat	nucleus	29.64	24.93
TraesCS2B01G209200.1	Wheat	nucleus	18.89	24.79
Bra013187.1-P	Field mustard	nucleus	17.92	24.61
KRH74020	Soybean	nucleus	19.87	24.06
KRH14103	Soybean	nucleus	19.71	23.82
Bra019095.1-P	Field mustard	nucleus	28.99	23.61
AT2G04880.1	Thale cress	nucleus	17.92	22.59
PGSC0003DMT400074158	Potato	nucleus	19.22	21.49
TraesCS7B01G185400.2	Wheat	nucleus	17.75	20.88

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF79	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2B01G217400	EnsemblPlants:TraesCS2B01G217400.2
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:206109893..206117059

Molecular Weight (calculated)

66213.1 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.790

Length

614 amino acids

Sequence
(BLAST)

001: MADSPNPSSG DLPSAAGSSP EKPYPADRRV AALAGAGARY KAMSPARLPI SREPCLTIPA GFSPSALLDS PVLLTNFKVE PSPTTGSLSM AAIMHKSAHP
101: DILPSPRDKS IRAHEDGGSR DFEFKPHLNS SSQSLAPAMS DLKKHEHSMQ NQSMNPSSSS SNMVNENRPP CSRESSLTVN VSAPNQPVGM VGLTDNMPAE
201: VGTSEPQQMN SSDNAMQEPQ SENVADKSAD DGYNWRKYGQ KHVKGSENPR SYYKCTHPNC EVKKLLERAV DGLITEVVYK GRHNHPKPQP NRRLAGGAVP
301: SNQGEERYDG AAAADDKSSN ALSNLANPVN SPGMVEPVPV SVSDDDIDAG GGRPYPGDDA TEEEDLESKR RKMESAGIDA ALMGKPNREP RVVVQTVSEV
401: DILDDGYRWR KYGQKVVKGN PNPRSYYKCT STGCPVRKHV ERASHDPKSV ITTYEGKHNH EVPAARNATH EMSAPPMKNV VHQINSSMPS SIGGMMRACE
501: ARNFSNQYSQ AAETDNVSLD LGVGISPNHS DATNQMQSSG PDQMQYQMQS MASMYSNMRH PSSMAVPTVQ GNSAGRMYGS REEKGNEGFT FRATPMDHSA
601: NLCYSGAGNL VMGP

Best Arabidopsis Sequence Match ( AT4G26640.1 )
(BLAST)

001: MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT
101: PPCQMTPTSS DIPAGSDQEE SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITDIIYKG THDHPKPQPG
201: RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ
301: TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS
401: DGPNHASNEH QHQNQQLVNQ THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR VQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.