Factsheet for VIT_19s0090g01720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98564	Soybean	nucleus	61.36	62.74
KRH73864	Soybean	nucleus	62.03	62.24
KRH46302	Soybean	nucleus	60.17	61.53
KRH14276	Soybean	nucleus	60.85	61.37
AT4G26640.2	Thale cress	nucleus	52.2	55.3
CDX92808	Canola	nucleus	48.98	55.15
CDY46692	Canola	nucleus	48.98	55.05
PGSC0003DMT400076670	Potato	nucleus	56.95	54.99
Solyc12g014610.1.1	Tomato	nucleus	56.78	54.83
Bra026414.1-P	Field mustard	nucleus	49.49	54.58
CDX89317	Canola	nucleus	49.32	54.49
CDX94303	Canola	nucleus	48.81	54.14
CDX97359	Canola	nucleus	48.81	53.63
Bra010431.1-P	Field mustard	nucleus	49.15	53.21
Bra028971.1-P	Field mustard	nucleus	43.73	53.2
GSMUA_Achr7P25840_001	Banana	nucleus	22.2	53.04
CDY14304	Canola	nucleus	48.98	52.83
GSMUA_Achr4P13970_001	Banana	nucleus	45.93	52.83
CDY70490	Canola	nucleus	45.59	51.93
VIT_00s0463g00010.t01	Wine grape	nucleus	53.39	51.47
Solyc07g065260.2.1	Tomato	nucleus	51.86	51.34
PGSC0003DMT400057409	Potato	nucleus	51.36	50.84
GSMUA_Achr3P29850_001	Banana	nucleus	45.42	46.53
Zm00001d021947_P002	Maize	nucleus	45.59	43.88
Zm00001d006702_P001	Maize	nucleus	45.25	43.77
KXG36569	Sorghum	nucleus	45.25	43.7
Os07t0583700-01	Rice	nucleus	45.76	43.69
KRH49522	Soybean	extracellular, plasma membrane	16.61	38.89
Bra019095.1-P	Field mustard	nucleus	48.81	38.2
VIT_12s0057g00550.t01	Wine grape	nucleus	24.41	35.73
VIT_06s0004g07500.t01	Wine grape	nucleus	34.07	33.33
TraesCS2A01G189700.1	Wheat	nucleus	33.56	32.35
TraesCS2B01G217400.2	Wheat	nucleus	33.56	32.25
HORVU2Hr1G036320.1	Barley	nucleus	33.39	32.03
VIT_08s0058g00690.t01	Wine grape	nucleus	29.83	31.88
VIT_01s0011g00220.t01	Wine grape	nucleus	26.95	31.67
VIT_14s0108g01280.t01	Wine grape	nucleus	28.14	31.5
TraesCS2D01G198100.4	Wheat	nucleus	33.39	30.88
VIT_08s0040g03070.t01	Wine grape	nucleus	24.75	30.61
VIT_04s0023g00470.t01	Wine grape	nucleus	22.88	26.89
VIT_19s0015g01870.t01	Wine grape	nucleus	33.22	26.27
VIT_04s0008g06600.t01	Wine grape	nucleus	19.15	23.01
VIT_11s0037g00150.t01	Wine grape	nucleus	17.63	20.84

Protein Annotations

EntrezGene:100245137	wikigene:100245137	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB50726	ProteinID:CCB50726.1
UniProt:F6HER4	EMBL:FN595751	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100245137	wikigene:LOC100245137	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000210A713
ArrayExpress:VIT_19s0090g01720	EnsemblPlantsGene:VIT_19s0090g01720	EnsemblPlants:VIT_19s0090g01720.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002274204
RefSeq:XP_002274204.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:+:7760183..7767013

Molecular Weight (calculated)

64352.2 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.658

Length

590 amino acids

Sequence
(BLAST)

001: MEESSFQPHN SSKEATSLPP LHSSNVASGS DGGARYRLMS PAKLPISRSP CLTIPSGLSP SSFLDSPVLL SNMKVEPSPT TGSFAKPQMI HGSVGSSMFS
101: STSNCSNSNT FDERKSGSFE FKPHTVSNSA SGLFLVGSPV SADLNHQQVK PFIPVQAQHP DLSLMPSPTV KSEMMAPSNE LSLCSPGHMV TSLESAPAEV
201: DSDELNQQGH PNNGVQASQS DQKGIGPSAV VERSSEDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK LFERAHDGQI VEIIYKGTHD HPKPQPSRRY
301: ASGAILPVQE ERPDKVSSLI GRDDKSPSIY GQMAHNIDPN GTPELSPVAA NDDVVEGAIL DEVDEDDPLS KRRKMEIGGI DVTPVVKPIR EPRVVVQTLS
401: EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNAGCPVRK HVERASHDPK AVITTYEGKH NHDVPTARTN SHDAAGQVAL NGMPMIRSEE NDTISLDLGV
501: GINSASENRP NVQHQTLHAE LVLTQTRTNN SNFQAVQATP VSRYYGVLNN GMDLYGFREN LGESRSFETP PLNHSSNPCP QNMGRILMGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.