Factsheet for VIT_14s0108g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01236	Soybean	nucleus	64.33	65.19
KRH44949	Soybean	nucleus	64.52	65.01
VIT_01s0011g00220.t01	Wine grape	nucleus	59.01	61.95
GSMUA_Achr4P07230_001	Banana	nucleus	49.34	55.32
GSMUA_Achr6P16760_001	Banana	nucleus	50.47	55.19
GSMUA_Achr7P26450_001	Banana	nucleus	49.72	54.81
GSMUA_Achr10P...	Banana	nucleus	47.44	54.0
GSMUA_Achr4P14270_001	Banana	nucleus	45.92	53.54
GSMUA_Achr7P00610_001	Banana	nucleus	45.73	50.0
Solyc03g104810.2.1	Tomato	nucleus	44.59	48.35
AT3G01080.2	Thale cress	nucleus	41.94	47.94
HORVU5Hr1G028340.1	Barley	nucleus	44.59	47.76
Solyc02g088340.2.1	Tomato	nucleus	41.56	47.61
PGSC0003DMT400003637	Potato	nucleus	40.61	47.45
EER94675	Sorghum	nucleus	44.78	47.39
EES16036	Sorghum	nucleus	44.59	47.38
TraesCS5A01G104900.1	Wheat	nucleus	44.59	47.28
TraesCS5D01G116100.1	Wheat	nucleus	44.59	47.28
TraesCS5B01G108500.1	Wheat	nucleus	44.4	47.27
TraesCS4A01G162500.1	Wheat	nucleus	43.64	47.13
Os12t0507300-00	Rice	nucleus	35.67	47.12
PGSC0003DMT400014220	Potato	nucleus	46.11	47.09
TraesCS4B01G165900.2	Wheat	nucleus	43.26	46.82
Zm00001d035323_P001	Maize	nucleus	44.02	46.77
TraesCS4D01G151700.1	Wheat	nucleus	42.69	46.39
Zm00001d041740_P001	Maize	nucleus	43.45	46.36
Zm00001d047309_P001	Maize	nucleus	43.07	45.67
CDX74281	Canola	nucleus	38.52	45.01
HORVU4Hr1G048400.1	Barley	mitochondrion	42.88	42.72
Zm00001d029564_P001	Maize	nucleus	30.17	42.18
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	29.22	41.29
VIT_08s0040g03070.t01	Wine grape	nucleus	33.59	37.11
Os07t0596900-00	Rice	nucleus	30.17	36.81
TraesCS2B01G209200.1	Wheat	nucleus	30.17	33.97
TraesCS2D01G190500.1	Wheat	nucleus	29.22	33.62
TraesCS2A01G182700.1	Wheat	nucleus	29.41	33.33
HORVU2Hr1G034420.2	Barley	nucleus	28.08	33.04
VIT_12s0057g00550.t01	Wine grape	nucleus	23.91	31.27
VIT_08s0058g00690.t01	Wine grape	nucleus	31.31	29.89
VIT_06s0004g07500.t01	Wine grape	nucleus	34.16	29.85
VIT_04s0008g06600.t01	Wine grape	nucleus	26.38	28.31
VIT_19s0090g01720.t01	Wine grape	nucleus	31.5	28.14
VIT_04s0023g00470.t01	Wine grape	nucleus	25.81	27.09
VIT_00s0463g00010.t01	Wine grape	nucleus	29.79	25.65
VIT_11s0037g00150.t01	Wine grape	nucleus	23.53	24.85
VIT_19s0015g01870.t01	Wine grape	nucleus	32.83	23.19

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB47584	ProteinID:CCB47584.1	UniProt:F6H5W3	EMBL:FN595239
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF84	SMART:SM00774
SUPFAM:SSF118290	TIGR:TC54065	UniParc:UPI00015C928B	ArrayExpress:VIT_14s0108g01280	EnsemblPlantsGene:VIT_14s0108g01280	EnsemblPlants:VIT_14s0108g01280.t01
unigene:Vvi.1826	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:29916401..29920389

Molecular Weight (calculated)

57501.0 Da

IEP (calculated)

8.231

GRAVY (calculated)

-0.788

Length

527 amino acids

Sequence
(BLAST)

001: MAQNDTSSFS SKVVAPSRPT IALPPRSSMD AFFFAATSPG PMTLVSSFFS DNYPDSDCRS FSQLLAGAMA SPGARPTLLS GNSTNHEGSG DGAEKSSLGF
101: RQNRPLSLAV ARSPMFSIPP GLSPSGLLNS PGFFSPLQSP FGMSHQQALA QVTAQAALSQ SHMFIQAEYQ PSSLEAPVES LAQDPSFITD ATTHQQVPPL
201: PSDPKSSMTE SSEVSHSDRK SQPPSLVVDK PGDDGYNWRK YGQKQVKGSE YPRSYYKCTH LNCPVKKKVE RSHDGQITEI IYKGQHNHEV PKPNKRAKDG
301: NDLNGHANSQ SKPELGSQGQ MGSLNRPNET VPANSVPGMD QETTQAMPLQ VNGSSDSEEV GDAETRVKED DDDDEPNPKR RQVAAPAEVV SSHKTVTEPR
401: IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP HPRSYYKCTS LGCNVRKHVE RASTDPKAVI TTYEGKHNHD VPAARNSSHN TANSNATQLK QHNVVAEKRA
501: LLKEMGFRNK DKKPVALLQL KEEQIAV

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.