Factsheet for HORVU2Hr1G034420.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G182700.1	Wheat	nucleus	85.71	82.58
TraesCS2D01G190500.1	Wheat	nucleus	84.38	82.53
TraesCS2B01G209200.1	Wheat	nucleus	84.6	80.98
Os07t0596900-00	Rice	nucleus	47.77	49.54
GSMUA_Achr4P14270_001	Banana	nucleus	30.8	30.53
GSMUA_Achr10P...	Banana	nucleus	31.03	30.02
GSMUA_Achr4P07230_001	Banana	nucleus	31.25	29.79
GSMUA_Achr6P16760_001	Banana	nucleus	31.7	29.46
HORVU4Hr1G048400.1	Barley	mitochondrion	34.38	29.11
GSMUA_Achr7P26450_001	Banana	nucleus	31.03	29.08
CDX74281	Canola	nucleus	28.35	28.16
VIT_14s0108g01280.t01	Wine grape	nucleus	33.04	28.08
AT3G01080.2	Thale cress	nucleus	28.57	27.77
HORVU5Hr1G028340.1	Barley	nucleus	30.36	27.64
KRH01236	Soybean	nucleus	31.92	27.5
KRH44949	Soybean	nucleus	31.92	27.34
Solyc03g104810.2.1	Tomato	nucleus	29.24	26.95
HORVU7Hr1G049130.1	Barley	nucleus, plastid	14.73	26.94
PGSC0003DMT400003637	Potato	nucleus	26.79	26.61
Solyc02g088340.2.1	Tomato	nucleus	27.01	26.3
PGSC0003DMT400014220	Potato	nucleus	29.91	25.97
HORVU1Hr1G070250.2	Barley	nucleus, plastid	28.12	24.61
HORVU3Hr1G088200.4	Barley	nucleus, plastid	29.24	21.87
HORVU0Hr1G004890.10	Barley	nucleus	25.89	19.27
HORVU5Hr1G072020.1	Barley	nucleus	28.57	18.93
HORVU2Hr1G036320.1	Barley	nucleus	25.89	18.86
HORVU7Hr1G066670.4	Barley	nucleus	23.21	17.93

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:HORVU2Hr1G034420	EnsemblPlants:HORVU2Hr1G034420.2	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF18	SMART:SM00774	SUPFAM:SSF118290	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:140216912..140220801

Molecular Weight (calculated)

48633.8 Da

IEP (calculated)

6.567

GRAVY (calculated)

-0.630

Length

448 amino acids

Sequence
(BLAST)

001: XAQLAPPPPL CAIALLGYPQ DNFDVFNEQD LAQVAAQVAQ KKELQEKQAA LLHPKVAPQL AFPKYSILDR VDNSSSFKPA TSVLTPQHVT SVIAASMQGM
101: STLPSHTGSG SMNTGPTGIL QVLQGSSTTL DSINTGSAGV LQVLQGSSTT LDSINTGSAG FLEALQGSSI TLDKPADDGY NWRKYGQKAV KGGKCPRSYY
201: KCTLNCPVRK NVEHSADGRI IKIVYRGQHC HEPPSKRFKD CGDLLNELDE LNDAEEPSTR SLLGCQGYYG KPKPITPNGT MVDGLLPTKE EGDEQLSSLS
301: DIREDDGEIR TVDGDVGDAD ANERNAPGQK IIVSTTSDVD LLDDGYRWRK YGQKVVRGNP HPRSYYKCTY QGCDVKKHVE RSSQEPHAVI TTYEGKHTHD
401: VPESRNRSQA TGSHHCKEQT YSEQPAASFC SSSEKRKYGT VILNDLAF

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.