CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01236	Soybean	nucleus	95.98	96.54
VIT_14s0108g01280.t01	Wine grape	nucleus	65.01	64.52
KRH70820	Soybean	nucleus, plastid	39.2	56.32
KRH74950	Soybean	nucleus	48.37	55.6
GSMUA_Achr7P26450_001	Banana	nucleus	48.57	53.14
GSMUA_Achr4P07230_001	Banana	nucleus	47.42	52.77
GSMUA_Achr4P14270_001	Banana	nucleus	45.12	52.21
GSMUA_Achr10P...	Banana	nucleus	44.93	50.76
KRH50544	Soybean	nucleus	42.83	50.68
GSMUA_Achr6P16760_001	Banana	nucleus	46.27	50.21
GSMUA_Achr7P00610_001	Banana	nucleus	45.7	49.59
KRG89512	Soybean	nucleus	41.3	49.2
EES16036	Sorghum	nucleus	46.46	48.99
TraesCS5B01G108500.1	Wheat	nucleus	45.89	48.48
HORVU5Hr1G028340.1	Barley	nucleus	45.32	48.17
TraesCS5D01G116100.1	Wheat	nucleus	45.7	48.09
TraesCS5A01G104900.1	Wheat	nucleus	45.7	48.09
EER94675	Sorghum	nucleus	45.7	47.99
Zm00001d041740_P001	Maize	nucleus	44.74	47.37
Zm00001d035323_P001	Maize	nucleus	44.74	47.18
AT3G01080.2	Thale cress	nucleus	41.11	46.64
Os12t0507300-00	Rice	nucleus	35.56	46.62
Zm00001d047309_P001	Maize	nucleus	43.98	46.28
TraesCS4A01G162500.1	Wheat	nucleus	43.02	46.11
PGSC0003DMT400003637	Potato	nucleus	39.58	45.9
Solyc02g088340.2.1	Tomato	nucleus	40.15	45.65
TraesCS4D01G151700.1	Wheat	nucleus	42.26	45.57
Solyc03g104810.2.1	Tomato	nucleus	42.26	45.47
TraesCS4B01G165900.2	Wheat	nucleus	42.26	45.38
CDX74281	Canola	nucleus	38.81	45.01
PGSC0003DMT400014220	Potato	nucleus	43.79	44.38
Zm00001d029564_P001	Maize	nucleus	30.59	42.44
HORVU4Hr1G048400.1	Barley	mitochondrion	41.49	41.02
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	28.49	39.95
KRH34225	Soybean	nucleus	13.77	37.5
KRH55277	Soybean	nucleus	14.53	35.85
Os07t0596900-00	Rice	nucleus	29.45	35.65
KRH49522	Soybean	extracellular, plasma membrane	16.44	34.13
TraesCS2B01G209200.1	Wheat	nucleus	29.25	32.69
KRH67621	Soybean	nucleus	27.92	32.59
TraesCS2A01G182700.1	Wheat	nucleus	28.87	32.47
TraesCS2D01G190500.1	Wheat	nucleus	28.3	32.31
KRG95903	Soybean	nucleus	29.06	32.27
HORVU2Hr1G034420.2	Barley	nucleus	27.34	31.92
KRG98195	Soybean	nucleus	31.74	30.63
KRH00362	Soybean	nucleus	31.55	30.5
KRH17125	Soybean	nucleus	33.08	30.09
KRH40825	Soybean	nucleus	31.17	30.02
KRH76058	Soybean	nucleus	29.06	29.98
KRH30155	Soybean	nucleus	31.36	29.93
KRH72765	Soybean	nucleus	33.08	29.83
KRH65526	Soybean	nucleus	28.87	29.78
KRH46302	Soybean	nucleus	31.36	28.42
KRG98564	Soybean	nucleus	30.98	28.08
KRH73864	Soybean	nucleus	31.17	27.72
KRH14276	Soybean	nucleus	30.59	27.35
KRH03056	Soybean	nucleus	6.12	27.12
KRH26105	Soybean	nucleus	22.37	25.05
KRH54934	Soybean	nucleus	21.99	24.47
KRH14103	Soybean	nucleus	22.75	23.43
KRH74020	Soybean	nucleus	22.56	23.27
KRH03057	Soybean	nucleus	16.83	22.8
KRH62550	Soybean	nucleus	32.89	22.6
KRH56379	Soybean	nucleus	32.7	22.04
KRH34226	Soybean	nucleus	14.15	22.02
KRH72303	Soybean	nucleus	21.99	21.58
KRH40304	Soybean	nucleus	29.83	21.25
KRH00919	Soybean	nucleus	29.83	20.97
KRH34224	Soybean	nucleus	12.05	17.17

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02004977	EnsemblPlantsGene:GLYMA_08G240800	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1KWA9	InterPro:IPR003657	InterPro:IPR036576
EnsemblPlants:KRH44949	ProteinID:KRH44949	ProteinID:KRH44949.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF84	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00023CAB3B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:20545530..20550378

Molecular Weight (calculated)

56833.2 Da

IEP (calculated)

8.154

GRAVY (calculated)

-0.759

Length

523 amino acids

Sequence
(BLAST)

001: MSTPNTDSGT APPPRPTITL PPRPSAEAFF SAAAGASPGP MTLVSSFFGS DAAADCRSFS QLLAGAMASP MAFSAAAAAA DNSGKDDDGP HKGFKQSRPM
101: NLVIARSPVF TVPPGLSPSG FLNSPGFFSP QSPFGMSHQQ ALAQVTAQAV LAQSHMHMQA DYQMPAVTAP TEPPVRQLSF ALNEASEQQV VSCVSSVSEP
201: RNAQLEAPEL SQADKKYQPS SQAIDKPADD GYNWRKYGQK QVKGSEYPRS YYKCTHLNCV VKKKVERAPD GHITEIIYKG QHNHEKPQAN RRAKDNSDSN
301: GNVTVQPKSE SNSQGWVGQL NKFSEKIPDS SVAKSDQTSN QGAPPRQLLP GSSESEEVGD VDNREEADDG EPNPKRRNTD VGVSEVPLSQ KTVTEPKIIV
401: QTRSEVDLLD DGYRWRKYGQ KVVKGNPHPR SYYKCTSAGC NVRKHVERAS MDPKAVITTY EGKHNHDVPA ARNSSHNTAS SNSMPLKPHN VVPEKHPLLK
501: DMDFGSTDQR PVHLRLKEEQ IIV

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.