CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00834
KRH06592
KRH40392
KRH43402
KRH48074
KRH50176
KRH53873
KRH59551
KRH64076
KRH71277

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30250.1	KRH50176	AT2G43790.1	15990873
AT2G30250.1	KRH71277	AT2G43790.1	15990873
AT2G30250.1	KRH43402	AT3G18690.1	15990873
AT2G30250.1	KRH53873	AT3G18690.1	15990873
AT2G30250.1	KRH59551	AT3G18690.1	15990873
AT2G30250.1	KRH64076	AT3G18690.1	15990873
AT2G30250.1	KRH00834	AT4G01370.1	15990873
AT2G30250.1	KRH06592	AT4G01370.1	15990873
AT2G30250.1	KRH40392	AT4G01370.1	15990873
AT2G30250.1	KRH48074	AT4G01370.1	15990873

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65526	Soybean	nucleus	91.52	91.52
KRH00362	Soybean	nucleus	61.93	58.04
KRH40825	Soybean	nucleus	60.95	56.91
AT5G07100.1	Thale cress	nucleus	30.57	50.16
CDY05016	Canola	nucleus	30.57	48.59
Bra028707.1-P	Field mustard	nucleus	30.37	48.28
CDY14055	Canola	nucleus	30.18	47.96
KRH17125	Soybean	nucleus	48.32	42.61
CDY29685	Canola	nucleus	28.99	42.0
Bra021623.1-P	Field mustard	nucleus	28.99	42.0
KRH72765	Soybean	nucleus	47.93	41.9
KRG98195	Soybean	nucleus	44.77	41.88
CDX97834	Canola	nucleus	29.19	41.0
Bra018325.1-P	Field mustard	nucleus	29.98	40.75
CDX84848	Canola	nucleus	30.37	40.74
KRH30155	Soybean	nucleus	43.98	40.69
CDY10720	Canola	nucleus	29.78	40.48
CDY24017	Canola	nucleus	30.18	40.48
Bra022786.1-P	Field mustard	nucleus	29.98	40.21
TraesCS1A01G070400.1	Wheat	nucleus	34.12	39.32
AT2G30250.1	Thale cress	nucleus	30.37	39.19
Os05t0343400-01	Rice	nucleus	36.49	37.99
KRH70820	Soybean	nucleus, plastid	27.22	37.91
CDY02051	Canola	nucleus	20.71	37.91
TraesCS1B01G088900.2	Wheat	nucleus	33.73	37.34
TraesCS1D01G072900.1	Wheat	nucleus	34.12	37.28
Zm00001d038023_P001	Maize	nucleus	35.9	37.22
KRH55277	Soybean	nucleus	15.38	36.79
Zm00001d010399_P001	Maize	nucleus	36.09	36.75
KXG21728	Sorghum	nucleus	36.69	35.98
KRH34225	Soybean	nucleus	13.41	35.42
KRH74950	Soybean	nucleus	28.01	31.21
KRG89512	Soybean	nucleus	27.02	31.21
KRH50544	Soybean	nucleus	27.02	31.0
KRH46302	Soybean	nucleus	34.12	29.98
KRG98564	Soybean	nucleus	33.73	29.64
KRH44949	Soybean	nucleus	29.98	29.06
KRH01236	Soybean	nucleus	29.39	28.65
KRH73864	Soybean	nucleus	33.14	28.57
KRH14276	Soybean	nucleus	32.94	28.55
KRH67621	Soybean	nucleus	24.85	28.12
KRH49522	Soybean	extracellular, plasma membrane	13.81	27.78
KRG95903	Soybean	nucleus	25.64	27.6
KRH62550	Soybean	nucleus	40.04	26.68
KRH56379	Soybean	nucleus	39.84	26.03
KRH03056	Soybean	nucleus	5.52	23.73
KRH74020	Soybean	nucleus	22.88	22.88
KRH14103	Soybean	nucleus	22.68	22.64
KRH34226	Soybean	nucleus	14.99	22.62
KRH40304	Soybean	nucleus	31.95	22.07
KRH26105	Soybean	nucleus	20.32	22.06
KRH54934	Soybean	nucleus	20.32	21.91
KRH00919	Soybean	nucleus	32.15	21.91
KRH34224	Soybean	nucleus	13.41	18.53
KRH72303	Soybean	nucleus	19.13	18.2
KRH03057	Soybean	nucleus	13.41	17.62

Protein Annotations

EntrezGene:100127367	MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	EMBL:ACUP02000552	EnsemblPlantsGene:GLYMA_01G128100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:K7K3I8	EnsemblPlants:KRH76058	ProteinID:KRH76058	ProteinID:KRH76058.1	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00023BE6E1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:44021857..44024845

Molecular Weight (calculated)

56297.3 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.967

Length

507 amino acids

Sequence
(BLAST)

001: MSFSFTDLLF TNNNNMNRDD DPFGLEFANN FKSASLPLSP SSIYPSYAEF PPGFAPTTQS LNSHHFFSSQ NVPASYTTEP SSSMSFNMRN SSTMGQHGNK
101: EEERNYSDHS FQTKANHVPL FQSSTSIFQV QEPQKKQDTM IFNEAAKQTD FSSERTETKS EYPSTQGFST ALASIKHEIQ SNSAPGSVQF NSTFAPKSIR
201: EQRRSEDGYN WRKYGEKQVK GSENPRSYYK CTHPSCPTKK KVERSLEGHI TEIVYKGSHN HPKPHGRKNG SQSIHQTSSP CTNSGISDQS VGDEDLEQTS
301: QTSYSGGGDD DLGNEAKRWK GENENDGYSY SSAGSRTVKE PKVVVQTTSE IDILDDGYRW RKYGQKVVKG NPNPRSYYKC VAPGCPVRKH VERASHDMKA
401: VITTYEGKHI HDVPLGRGNS SYSMNRNSLN NTSNNTNTSN VTAPAPIRPS ALTNYSNSAS FTNSLHDTKQ PTSAGQEPFP MDLLLSPGSI GFSANDSFLQ
501: SFLSKNF

Best Arabidopsis Sequence Match ( AT1G13960.2 )
(BLAST)

001: MTHQQALAQV TAQAVQANAN MQPQTEYPPP SQVQSFSSGQ AQIPTSAPLP AQRETSDVTI IEHRSQQPLN VDKPADDGYN WRKYGQKQVK GSEFPRSYYK
101: CTNPGCPVKK KVERSLDGQV TEIIYKGQHN HEPPQNTKRG NKDNTANING SSINNNRGSS ELGASQFQTN SSNKTKREQH EAVSQATTTE HLSEASDGEE
201: VGNGETDVRE KDENEPDPKR RSTEVRISEP APAASHRTVT EPRIIVQTTS EVDLLDDGYR WRKYGQKVVK GNPYPRSYYK CTTPGCGVRK HVERAATDPK
301: AVVTTYEGKH NHDLPAAKSS SHAAAAAQLR PDNRPGGLAN LNQQQQQQPV ARLRLKEEQT T

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.