CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98564	Soybean	nucleus	94.8	94.8
KRH73864	Soybean	nucleus	76.26	74.83
KRH14276	Soybean	nucleus	75.22	74.19
KRH55277	Soybean	nucleus	26.52	72.17
VIT_19s0090g01720.t01	Wine grape	nucleus	61.53	60.17
Solyc12g014610.1.1	Tomato	nucleus	54.07	51.06
PGSC0003DMT400076670	Potato	nucleus	53.9	50.9
GSMUA_Achr7P25840_001	Banana	nucleus	20.97	48.99
Solyc07g065260.2.1	Tomato	nucleus	50.26	48.66
PGSC0003DMT400057409	Potato	nucleus	50.26	48.66
GSMUA_Achr4P13970_001	Banana	nucleus	42.11	47.37
KRH49522	Soybean	extracellular, plasma membrane	19.24	44.05
Os07t0583700-01	Rice	nucleus	46.62	43.53
Zm00001d021947_P002	Maize	nucleus	45.06	42.41
KXG36569	Sorghum	nucleus	44.37	41.9
Zm00001d006702_P001	Maize	nucleus	44.19	41.8
GSMUA_Achr3P29850_001	Banana	nucleus	41.59	41.67
KRH70820	Soybean	nucleus, plastid	23.74	37.64
KRG98195	Soybean	nucleus	33.97	36.16
KRH34225	Soybean	nucleus	11.96	35.94
KRH30155	Soybean	nucleus	33.62	35.4
KRH17125	Soybean	nucleus	35.01	35.13
KRH72765	Soybean	nucleus	34.66	34.48
KRH76058	Soybean	nucleus	29.98	34.12
KRH65526	Soybean	nucleus	29.81	33.92
KRH50544	Soybean	nucleus	24.96	32.58
KRH00362	Soybean	nucleus	30.33	32.35
TraesCS2A01G189700.1	Wheat	nucleus	33.97	32.03
KRG89512	Soybean	nucleus	24.26	31.89
TraesCS2B01G217400.2	Wheat	nucleus	33.8	31.76
KRH40825	Soybean	nucleus	29.81	31.68
HORVU2Hr1G036320.1	Barley	nucleus	33.62	31.54
KRH74950	Soybean	nucleus	24.78	31.43
KRH44949	Soybean	nucleus	28.42	31.36
KRH01236	Soybean	nucleus	28.25	31.35
TraesCS2D01G198100.4	Wheat	nucleus	33.45	30.25
KRH67621	Soybean	nucleus	23.05	29.69
KRG95903	Soybean	nucleus	23.22	28.45
KRH03056	Soybean	nucleus	5.72	27.97
KRH74020	Soybean	nucleus	23.05	26.23
KRH14103	Soybean	nucleus	22.7	25.79
KRH62550	Soybean	nucleus	33.45	25.36
KRH56379	Soybean	nucleus	33.8	25.13
KRH40304	Soybean	nucleus	31.37	24.66
KRH00919	Soybean	nucleus	31.54	24.46
KRH34226	Soybean	nucleus	14.04	24.11
KRH26105	Soybean	nucleus	18.2	22.48
KRH54934	Soybean	nucleus	18.02	22.13
KRH72303	Soybean	nucleus	17.68	19.14
KRH34224	Soybean	nucleus	11.79	18.53
KRH03057	Soybean	nucleus	11.96	17.88

Protein Annotations

EntrezGene:100127383	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02005338	EnsemblPlantsGene:GLYMA_08G325800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1KYG7	InterPro:IPR003657
InterPro:IPR036576	EnsemblPlants:KRH46302	ProteinID:KRH46302	ProteinID:KRH46302.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002338DDC	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:44390761..44396851

Molecular Weight (calculated)

62394.2 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.722

Length

577 amino acids

Sequence
(BLAST)

001: MDAGEALSDD PNRPNSAADA APAPAGARYK LLSPAKLPIS RSPCVTISPG LSPTSFLESP VLLSNMKVEP SPTTGSLSLL HQTAYGSMTS AASATFPVTT
101: VCFNSNTVDE RKPSFFEFKP HSGSNMVPAD FDNHASEKST QIDSQGKAQA FDSSALVKNE SASPSNELSL SSPVQMDCSG ASARVEGDLD ELNPRSNITT
201: GLQASQVDNR GSGLTVAAER VSDDGYNWRK YGQKHVKGSE FPRSYYKCTH PNCEVKKLFE RSHDGQITEI IYKGTHDHPK PQPNRRYSAG TIMSVQEDRS
301: DKASLTSRDD KGSNMCGQGS HLAEPDGKPE LLPVATNDGD LDGLGVLSNR NNDEVDDDDP FSKRRKMDVG IADITPVVKP IREPRVVVQT LSEVDILDDG
401: YRWRKYGQKV VRGNPNPRSY YKCTNTGCPV RKHVERASHD PKAVITTYEG KHNHDVPTAR NSCHDMAGPA SASGQTRVRP EESDTISLDL GMGISPAAEN
501: TSNSQGRMML SEFGDSQIHT SNSNFKFVHT TTAPGYFGVL NNNSNPYGSK ENPSDGPSLN HSAYPCPQNI GRILMGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.