CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70820	Soybean	nucleus, plastid	74.73	93.41
KRG89512	Soybean	nucleus	63.74	66.06
KRH50544	Soybean	nucleus	63.96	65.84
CDY53941	Canola	nucleus	54.29	56.14
CDY33788	Canola	nucleus	54.51	56.11
CDY36419	Canola	nucleus	55.82	55.82
CDX98138	Canola	nucleus	56.04	55.8
CDY16122	Canola	nucleus	54.07	54.91
VIT_01s0011g00220.t01	Wine grape	nucleus	60.0	54.38
Solyc05g012770.2.1	Tomato	nucleus	59.34	53.15
CDY62213	Canola	nucleus	54.07	53.02
PGSC0003DMT400072836	Potato	nucleus	58.9	52.76
CDX96873	Canola	nucleus	53.41	52.15
Bra019697.1-P	Field mustard	nucleus	56.26	51.93
Bra016716.1-P	Field mustard	nucleus	52.97	51.83
Bra026554.1-P	Field mustard	nucleus	54.07	51.79
Bra026869.1-P	Field mustard	nucleus	54.51	51.67
Bra024780.1-P	Field mustard	nucleus	54.73	51.23
CDY45169	Canola	nucleus	54.29	50.82
AT1G13960.1	Thale cress	nucleus	57.36	50.78
CDY03003	Canola	nucleus	53.85	50.1
AT2G03340.1	Thale cress	nucleus	56.48	50.1
KRH01236	Soybean	nucleus	55.82	48.85
KRH44949	Soybean	nucleus	55.6	48.37
CDY37191	Canola	nucleus	51.21	47.94
KRH34225	Soybean	nucleus	14.29	33.85
KRH55277	Soybean	nucleus	15.16	32.55
KRH67621	Soybean	nucleus	31.87	32.37
KRG95903	Soybean	nucleus	33.19	32.06
KRH49522	Soybean	extracellular, plasma membrane	17.36	31.35
CDY72350	Canola	nucleus	9.67	30.34
KRG98195	Soybean	nucleus	34.51	28.97
KRH17125	Soybean	nucleus	35.82	28.35
KRH30155	Soybean	nucleus	34.07	28.28
KRH72765	Soybean	nucleus	35.82	28.1
KRH76058	Soybean	nucleus	31.21	28.01
KRH65526	Soybean	nucleus	30.99	27.81
KRH00362	Soybean	nucleus	32.09	26.99
KRH03056	Soybean	nucleus	6.81	26.27
KRH40825	Soybean	nucleus	30.99	25.97
Bra030848.1-P	Field mustard	nucleus	11.43	25.62
KRH14276	Soybean	nucleus	32.31	25.13
CDY62293	Canola	nucleus	11.21	25.12
CDY62292	Canola	nucleus	11.43	25.0
KRH73864	Soybean	nucleus	32.31	25.0
KRH46302	Soybean	nucleus	31.43	24.78
KRG98564	Soybean	nucleus	31.21	24.61
KRH26105	Soybean	nucleus	25.05	24.41
KRH54934	Soybean	nucleus	24.62	23.83
KRH14103	Soybean	nucleus	26.15	23.43
KRH74020	Soybean	nucleus	25.93	23.27
KRH03057	Soybean	nucleus	18.68	22.02
KRH62550	Soybean	nucleus	35.6	21.29
KRH72303	Soybean	nucleus	24.62	21.01
KRH56379	Soybean	nucleus	34.95	20.49
KRH40304	Soybean	nucleus	32.97	20.44
KRH00919	Soybean	nucleus	32.75	20.03
KRH34226	Soybean	nucleus	14.73	19.94
KRH34224	Soybean	nucleus	13.41	16.62

Protein Annotations

EntrezGene:100127369	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:ACUP02000097	EnsemblPlantsGene:GLYMA_01G053800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1J5V4	InterPro:IPR003657
InterPro:IPR036576	EnsemblPlants:KRH74950	ProteinID:KRH74950	ProteinID:KRH74950.1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF84	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000233740A	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6810996..6816225

Molecular Weight (calculated)

49579.2 Da

IEP (calculated)

7.558

GRAVY (calculated)

-0.910

Length

455 amino acids

Sequence
(BLAST)

001: MAGGGGGDRP PWKEAAPPRP TITLPPRSGS METLFNGGFS PGPMTLLSGF LGDGDDGKSF SQLLAGAMAS PVAGAVADGV MDSPSLFSPS QVSFGMTHQQ
101: ALTQVSAQAS QANSNMHIQA EHSLTQASAA TFNTTQQLIP PLNADSWATM TESADHSHSE QRLQSSLLNV DKPADDGYNW RKYGQKQVKG SEFPRSYYKC
201: THPNCSVKKK VERSLEGHVT AIIYKGEHNH QRPHPNKRSK DTMTSNANSN IQGSVDSTYQ GTTTNSMSKM DPESSQATAD HLSGTSESEE VGDHETEVDE
301: KNVEPDPKRR KAEVSQSDPA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP YPRSYYKCTT QGCNVRKHVE RASTDPKAVI TTYEGKHNHD
401: VPAAKNNSHT MASNTASQLK SHNTNPEKHN FGSRGMGGNE QQPVARLRLK EEQIT

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.