Factsheet for VIT_01s0011g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012770.2.1	Tomato	nucleus	67.33	66.54
PGSC0003DMT400072836	Potato	nucleus	66.93	66.14
KRH70820	Soybean	nucleus, plastid	45.42	62.64
CDY53941	Canola	nucleus	53.59	61.14
KRH74950	Soybean	nucleus	54.38	60.0
Bra026554.1-P	Field mustard	nucleus	56.18	59.37
CDY36419	Canola	nucleus	53.78	59.34
VIT_14s0108g01280.t01	Wine grape	nucleus	61.95	59.01
CDX98138	Canola	nucleus	53.59	58.86
CDY62213	Canola	nucleus	54.18	58.62
CDY33788	Canola	nucleus	51.2	58.14
AT2G03340.1	Thale cress	nucleus	59.36	58.09
Bra024780.1-P	Field mustard	nucleus	56.18	58.02
CDY45169	Canola	nucleus	55.98	57.82
Bra026869.1-P	Field mustard	nucleus	55.18	57.71
CDX96873	Canola	nucleus	53.39	57.51
CDY03003	Canola	nucleus	55.98	57.46
AT1G13960.1	Thale cress	nucleus	58.76	57.39
Bra016716.1-P	Field mustard	nucleus	52.99	57.2
CDY16122	Canola	nucleus	51.0	57.14
KRH50544	Soybean	nucleus	49.8	56.56
Bra019697.1-P	Field mustard	nucleus	55.38	56.39
KRG89512	Soybean	nucleus	48.8	55.81
CDY37191	Canola	nucleus	52.79	54.53
VIT_08s0040g03070.t01	Wine grape	nucleus	34.46	36.27
VIT_12s0057g00550.t01	Wine grape	nucleus	24.9	31.02
VIT_06s0004g07500.t01	Wine grape	nucleus	36.26	30.18
VIT_08s0058g00690.t01	Wine grape	nucleus	33.07	30.07
VIT_04s0008g06600.t01	Wine grape	nucleus	28.29	28.92
CDY72350	Canola	nucleus	7.97	27.59
VIT_19s0090g01720.t01	Wine grape	nucleus	31.67	26.95
VIT_00s0463g00010.t01	Wine grape	nucleus	31.27	25.65
VIT_11s0037g00150.t01	Wine grape	nucleus	25.3	25.45
Bra030848.1-P	Field mustard	nucleus	10.16	25.12
VIT_04s0023g00470.t01	Wine grape	nucleus	24.1	24.1
VIT_19s0015g01870.t01	Wine grape	nucleus	35.26	23.73
CDY62293	Canola	nucleus	9.56	23.65
CDY62292	Canola	nucleus	9.76	23.56

Protein Annotations

EntrezGene:100233123	wikigene:100233123	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:AAT46067	ProteinID:AAT46067.1
EMBL:AM440307	EMBL:AY596466	ProteinID:CAN80574	ProteinID:CAN80574.1	ProteinID:CCB59743	ProteinID:CCB59743.1
UniProt:F6HYH9	EMBL:FN596498	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF84	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000210A503	ArrayExpress:VIT_01s0011g00220	EnsemblPlantsGene:VIT_01s0011g00220
EnsemblPlants:VIT_01s0011g00220.t01	EntrezGene:WRKY2	wikigene:WRKY2	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr1_random:+:297588..311938

Molecular Weight (calculated)

54611.0 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.846

Length

502 amino acids

Sequence
(BLAST)

001: MTKNDETSLS SSASASRASA PLRPTITLPP RSSMETLFPG GPGFSPGPMT LVSNFFSDND PDSDCRSFSQ LLAGAMASPA AFPGPRPSFS TDPQVSASSK
101: EDRTSVDAAG DFEFRFKQNR PSGLVIAQSP LFTVPPGLSP TCLLDSPGFF SQGPFVMSHQ QALAQVTAQA AQAHSHMQLQ AKFPSSLSVA PAASLTQFPS
201: FASNTKAHEQ MPPLVSDTRT AVKESSGLSQ SDQRSQPSSF TVDKPADDGY NWRKYGQKQV KGSEYPRSYY KCTHPSCPVK KKVERSLDGQ VTEIIYKGQH
301: NHQAPLPNKR AKDTGNPNGN SNFQENPELA SQNQTGNLNK PKEGLPAYSL SKKDQESSQA IPEHLPGSSD SEEMDDAETR GDEKGEDEPD PKRRNTEVRV
401: SDQVSSHRTV TEPRIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPYPRSYY KCTNPGCNVR KHVERAATDP KAVITTYEGK HNHDVPAAKS SSHNTANSIA
501: SQ

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.