Factsheet for VIT_08s0040g03070.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67621	Soybean	nucleus	62.68	66.74
KRG95903	Soybean	nucleus	64.99	65.82
PGSC0003DMT400028530	Potato	nucleus	50.73	51.82
Solyc10g084380.1.1	Tomato	nucleus	45.07	50.95
Bra023112.1-P	Field mustard	nucleus	44.65	50.71
AT2G37260.1	Thale cress	nucleus	44.86	49.88
CDX74976	Canola	nucleus	40.46	48.49
GSMUA_Achr1P17160_001	Banana	nucleus	41.72	48.42
Bra005210.1-P	Field mustard	nucleus	41.51	48.41
CDX91348	Canola	nucleus	40.25	47.76
CDY46769	Canola	nucleus	31.45	46.44
CDY46768	Canola	nucleus	31.45	46.44
CDX79729	Canola	nucleus	31.24	46.27
GSMUA_Achr4P16840_001	Banana	nucleus	40.25	45.61
VIT_01s0011g00220.t01	Wine grape	nucleus	36.27	34.46
VIT_14s0108g01280.t01	Wine grape	nucleus	37.11	33.59
VIT_08s0058g00690.t01	Wine grape	nucleus	32.08	27.72
VIT_06s0004g07500.t01	Wine grape	nucleus	35.01	27.69
VIT_12s0057g00550.t01	Wine grape	nucleus	22.85	27.05
VIT_19s0090g01720.t01	Wine grape	nucleus	30.61	24.75
VIT_04s0023g00470.t01	Wine grape	nucleus	26.0	24.7
VIT_04s0008g06600.t01	Wine grape	nucleus	24.11	23.42
VIT_00s0463g00010.t01	Wine grape	nucleus	28.09	21.9
VIT_11s0037g00150.t01	Wine grape	nucleus	21.8	20.84
VIT_19s0015g01870.t01	Wine grape	nucleus	31.45	20.11

Protein Annotations

EntrezGene:100256868	wikigene:100256868	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB57005	ProteinID:CCB57005.1
UniProt:F6HQV7	EMBL:FN596008	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100256868	wikigene:LOC100256868	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF50	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC57603
UniParc:UPI0001983C65	ArrayExpress:VIT_08s0040g03070	EnsemblPlantsGene:VIT_08s0040g03070	EnsemblPlants:VIT_08s0040g03070.t01	unigene:Vvi.13980	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002275978	RefSeq:XP_002275978.1	RefSeq:XP_010653470.1	RefSeq:XP_010653471.1	RefSeq:XP_010653472.1
RefSeq:XP_019077272.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:-:14033449..14039296

Molecular Weight (calculated)

52306.5 Da

IEP (calculated)

8.843

GRAVY (calculated)

-1.000

Length

477 amino acids

Sequence
(BLAST)

001: MEIKESERIV VAKPVASRPT CSSFRSFSEL LAGAINASPP TPCPETSFAA IRPKTVRFKP VANRAPIGVV SSQAQVSGTE VCNSSDKVLK SDSKPTVVYK
101: PLAKLVSKTT VSLLANLGSS NMSHQQTLAQ VEARVQPPNQ DRQHSRPHLS SNLHQTFPSQ EETDRTSEPS KTASQNLEED QKPLLPSSNG DRPSYDGYNW
201: RKYGQKQVKG SEYPRSYYKC TYPSCPVKKK VERSLDGQIA EIVYKGEHNH SKPQPPKRNS SGTLGQGFVS DGTGQDTNNP AWGTRLNERN EGSEGRIENQ
301: NEVGLSTHST YPGKAPLNYD SGTTGALKAG GGTPDNSCGL SGDCEEGSKG LEPEEDEPRS KRRKSENQSS ETVIVGEGAQ EPRIVVQNST DSEILGDGFR
401: WRKYGQKVVK GNSYPRSYYR CTSLKCNVRK HVERASEDPG SFITTYEGKH NHDMPTRNTN AATSEPDMQA HTNKEKP

Best Arabidopsis Sequence Match ( AT2G37260.1 )
(BLAST)

001: MEVNDGERVV IAKPVASRPS SSSGFRTFTE LLTDSVTVSP QTTCHEIVDA AIRPKTLRFN QPVAASVSCP RAEVKGIGNG MSCDDDSDSR NYVVYKPKAK
101: LVSKATVSAL ANMLQGNRQQ TWRQSEAVSY GKSVSQGTHR AGPNLVQKVP SFTESETSTG DRSSVDGYNW RKYGQKQVKG SECPRSYYKC THPKCPVKKK
201: VERSVEGQVS EIVYQGEHNH SKPSCPLPRR ASSSISSGFQ KPPKSIASEG SMGQDPNNNL YSPLWNNQSN DSTQNRTEKM SEGCVITPFE FAVPRSTNSN
301: PGTSDSGCKS SQCDEGELDD PSRSKRRKNE KQSSEAGVSQ GSVESDSLED GFRWRKYGQK VVGGNAYPRS YYRCTSANCR ARKHVERASD DPRAFITTYE
401: GKHNHHLLLS PPSSSTLPFN SPQLSKQTI

Arabidopsis Description

WRKY44WRKY transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.