Factsheet for Bra005210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74976	Canola	nucleus	93.64	96.23
Bra023112.1-P	Field mustard	nucleus	80.93	78.81
AT2G37260.1	Thale cress	nucleus	78.73	75.06
VIT_08s0040g03070.t01	Wine grape	nucleus	48.41	41.51
KRH67621	Soybean	nucleus	44.5	40.62
KRG95903	Soybean	nucleus	45.23	39.28
GSMUA_Achr1P17160_001	Banana	nucleus	36.43	36.25
GSMUA_Achr4P16840_001	Banana	nucleus	35.94	34.92
Solyc10g084380.1.1	Tomato	nucleus	35.94	34.83
PGSC0003DMT400028530	Potato	nucleus	38.88	34.05
Bra028707.1-P	Field mustard	nucleus	24.94	31.97
Bra021623.1-P	Field mustard	nucleus	26.16	30.57
Bra018325.1-P	Field mustard	nucleus	25.67	28.15
Bra022786.1-P	Field mustard	nucleus	24.94	26.98
Bra016716.1-P	Field mustard	nucleus	30.32	26.67
Bra026554.1-P	Field mustard	nucleus	30.32	26.11
Bra026869.1-P	Field mustard	nucleus	30.56	26.04
Bra019697.1-P	Field mustard	nucleus	30.56	25.36
Bra024780.1-P	Field mustard	nucleus	29.83	25.1
Bra005104.1-P	Field mustard	nucleus	27.63	24.73
Bra017117.1-P	Field mustard	nucleus	27.63	24.41
Bra000064.1-P	Field mustard	nucleus	27.14	23.47
Bra028971.1-P	Field mustard	nucleus	27.38	23.09
Bra028939.1-P	Field mustard	nucleus	24.69	22.49
Bra026438.1-P	Field mustard	nucleus	27.87	21.35
Bra019105.1-P	Field mustard	nucleus	27.38	21.17
Bra013187.1-P	Field mustard	nucleus	21.52	19.69
Bra026414.1-P	Field mustard	nucleus	25.43	19.44
Bra010431.1-P	Field mustard	nucleus	25.67	19.27
Bra030848.1-P	Field mustard	nucleus	9.54	19.21
Bra002828.1-P	Field mustard	nucleus	31.3	19.02
Bra010266.1-P	Field mustard	nucleus	18.83	16.85
Bra030847.1-P	Field mustard	nucleus	14.91	13.65
Bra037106.1-P	Field mustard	nucleus	14.18	13.43
Bra019095.1-P	Field mustard	nucleus	24.69	13.4
Bra024035.1-P	Field mustard	nucleus	18.83	13.07
Bra038006.1-P	Field mustard	nucleus	13.2	8.26

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra005210	EnsemblPlants:Bra005210.1	EnsemblPlants:Bra005210.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4CLX3	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF50	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI00025479AE	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

AT2G37260 (E=8e-101) TTG2, ATWRKY44, WRKY44, DSL1 | TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor

Coordinates

chrA05:-:4035604..4037093

Molecular Weight (calculated)

44897.0 Da

IEP (calculated)

9.190

GRAVY (calculated)

-0.890

Length

409 amino acids

Sequence
(BLAST)

001: MDVKESERKV VAKPVASRPS CSSVRTFTDL LADSVTVSPQ SNCHETVDAS IIPKTERFKQ PASASVSSPR VEGSGDVKSC DDSESKSYVI YKPKAKLVSQ
101: ATVSALANML PGNCQQAWIK REAVAYGKRV NQGTHRAVPN LVPRVPTFKE SETSTGDRSY VDGYNWRKYG QKQVKGSDSP RGYYKCTHPK CPVKKSVERS
201: SMGGHVSEIV YQGEHNHSKP SCPLLRRASS SSSSGFQTPS EGSMGEEPNP LWSNQEKMNE GCVITPFEFA VPRTANSTGG TSDSGCRSSQ CDERELDDPS
301: RSKTSMKNET QSSEAGVSQS SGESDSLEDG FKWRKYGQKA VGGNAYPRSY YRCTSVNCRA RKRVERANDD PKAFITTYEG KHNHHHLQLR PPTSSTLPFS
401: SPQHSNQAI

Best Arabidopsis Sequence Match ( AT2G37260.1 )
(BLAST)

001: MEVNDGERVV IAKPVASRPS SSSGFRTFTE LLTDSVTVSP QTTCHEIVDA AIRPKTLRFN QPVAASVSCP RAEVKGIGNG MSCDDDSDSR NYVVYKPKAK
101: LVSKATVSAL ANMLQGNRQQ TWRQSEAVSY GKSVSQGTHR AGPNLVQKVP SFTESETSTG DRSSVDGYNW RKYGQKQVKG SECPRSYYKC THPKCPVKKK
201: VERSVEGQVS EIVYQGEHNH SKPSCPLPRR ASSSISSGFQ KPPKSIASEG SMGQDPNNNL YSPLWNNQSN DSTQNRTEKM SEGCVITPFE FAVPRSTNSN
301: PGTSDSGCKS SQCDEGELDD PSRSKRRKNE KQSSEAGVSQ GSVESDSLED GFRWRKYGQK VVGGNAYPRS YYRCTSANCR ARKHVERASD DPRAFITTYE
401: GKHNHHLLLS PPSSSTLPFN SPQLSKQTI

Arabidopsis Description

WRKY44WRKY transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.