Factsheet for PGSC0003DMT400028530

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084380.1.1	Tomato	nucleus	82.87	91.71
VIT_08s0040g03070.t01	Wine grape	nucleus	51.82	50.73
KRH67621	Soybean	nucleus	45.18	47.1
KRG95903	Soybean	nucleus	46.04	45.65
GSMUA_Achr1P17160_001	Banana	nucleus	36.19	41.12
Bra023112.1-P	Field mustard	nucleus	36.19	40.24
AT2G37260.1	Thale cress	nucleus	35.97	39.16
Bra005210.1-P	Field mustard	nucleus	34.05	38.88
CDX74976	Canola	nucleus	32.98	38.69
CDX91348	Canola	nucleus	33.19	38.56
GSMUA_Achr4P16840_001	Banana	nucleus	33.19	36.82
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	12.21	35.4
CDY46769	Canola	nucleus	23.98	34.67
CDY46768	Canola	nucleus	23.98	34.67
CDX79729	Canola	nucleus	23.77	34.47
PGSC0003DMT400072836	Potato	nucleus	29.55	27.17
PGSC0003DMT400003637	Potato	nucleus	26.12	27.05
PGSC0003DMT400014220	Potato	nucleus	28.48	25.78
PGSC0003DMT400043204	Potato	nucleus	28.69	25.09
PGSC0003DMT400060042	Potato	nucleus	23.55	24.07
PGSC0003DMT400030388	Potato	nucleus	20.77	23.77
PGSC0003DMT400015754	Potato	nucleus	20.34	22.51
PGSC0003DMT400076670	Potato	nucleus	26.55	20.29
PGSC0003DMT400057409	Potato	nucleus	25.48	19.97
PGSC0003DMT400029069	Potato	mitochondrion	5.14	19.67
PGSC0003DMT400074158	Potato	nucleus	21.63	18.4
PGSC0003DMT400056952	Potato	nucleus	27.62	17.25
PGSC0003DMT400029328	Potato	nucleus	24.63	16.5

Protein Annotations

EntrezGene:102603993	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1AR98	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400010987	PGSC:PGSC0003DMG400010987	EnsemblPlants:PGSC0003DMT400028530	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF50
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00029539DA	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006339294.2
RefSeq:XP_015165027.1	RefSeq:XP_015165028.1	RefSeq:XP_015165029.1	RefSeq:XP_015165031.1	RefSeq:XP_015165033.1	RefSeq:XP_015165034.1
SEG:seg	:	:	:	:	:

Description

WRKY 13 [Source:PGSC_GENE;Acc:PGSC0003DMG400010987]

Coordinates

chr10:-:54719712..54723177

Molecular Weight (calculated)

52050.3 Da

IEP (calculated)

9.963

GRAVY (calculated)

-0.858

Length

467 amino acids

Sequence
(BLAST)

001: MEVNETAKIA IVRPVASRPR CPIYKSFSEL LAGAVDISST NARSEMAITA IRPKTVRLKP VTNHALVGER SSQIGVSEAP VGCRSDYILQ SVEKPKVLYK
101: PIAKLAPRKT IPLLENKGSS VSDQRREKAE TKAGVQSANE VKQHRDLTTE SKRSLLAKSG EDKKIVGSTI VSESTEEVPQ SLINTSNVDR PSYDGYNWRK
201: YGQKQVKGSE YPRSYYKCTH LKCPVKKKVE RSYDAQIAEI VYRGEHNHPK PQPPKRNLSD VHVRAAVCND TSKETNNPAW SNQHPQTSEA YVYRIENQND
301: FGLTIHSAHS SKAPCFYDPI AAAGMLTVVG NSEDSAEGSK KLETTCDEPK TKRRKLKGQC NGAGTSGEST FPYIPNQSTT DSEITDDGFR WRKYGQKVVK
401: GSSYPRSYYR CTSPKCSMRK FVERTMDDPK AFITTYEGKH NHVVPNRRPN SEASKTSSKS SAMKEKS

Best Arabidopsis Sequence Match ( AT2G37260.1 )
(BLAST)

001: MEVNDGERVV IAKPVASRPS SSSGFRTFTE LLTDSVTVSP QTTCHEIVDA AIRPKTLRFN QPVAASVSCP RAEVKGIGNG MSCDDDSDSR NYVVYKPKAK
101: LVSKATVSAL ANMLQGNRQQ TWRQSEAVSY GKSVSQGTHR AGPNLVQKVP SFTESETSTG DRSSVDGYNW RKYGQKQVKG SECPRSYYKC THPKCPVKKK
201: VERSVEGQVS EIVYQGEHNH SKPSCPLPRR ASSSISSGFQ KPPKSIASEG SMGQDPNNNL YSPLWNNQSN DSTQNRTEKM SEGCVITPFE FAVPRSTNSN
301: PGTSDSGCKS SQCDEGELDD PSRSKRRKNE KQSSEAGVSQ GSVESDSLED GFRWRKYGQK VVGGNAYPRS YYRCTSANCR ARKHVERASD DPRAFITTYE
401: GKHNHHLLLS PPSSSTLPFN SPQLSKQTI

Arabidopsis Description

WRKY44WRKY transcription factor 44 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUU0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.