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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 4
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g014990.2.1 Tomato nucleus 92.4 71.27
PGSC0003DMT400046529 Potato endoplasmic reticulum, vacuole 17.16 43.48
VIT_08s0058g00690.t01 Wine grape nucleus 52.21 38.59
PGSC0003DMT400043204 Potato nucleus 49.51 37.83
Bra005104.1-P Field mustard nucleus 40.93 36.54
CDX91470 Canola nucleus, plastid 41.91 35.92
Bra000064.1-P Field mustard nucleus 41.42 35.73
CDY07729 Canola nucleus 41.42 35.73
CDY65564 Canola nucleus, plastid 41.18 35.67
Bra017117.1-P Field mustard nucleus 39.46 34.77
CDY14459 Canola nucleus, plastid 41.67 34.69
CDY69941 Canola nucleus, plastid 40.44 34.59
CDY18383 Canola nucleus, plastid 40.69 34.51
AT2G38470.1 Thale cress nucleus, plastid 43.38 34.1
CDY48650 Canola nucleus, plastid 32.6 30.02
PGSC0003DMT400003637 Potato nucleus 27.45 24.83
PGSC0003DMT400072836 Potato nucleus 30.88 24.8
PGSC0003DMT400014220 Potato nucleus 28.68 22.67
PGSC0003DMT400076670 Potato nucleus 33.33 22.26
PGSC0003DMT400057409 Potato nucleus 32.11 21.98
PGSC0003DMT400060042 Potato nucleus 23.77 21.23
PGSC0003DMT400015754 Potato nucleus 21.57 20.85
PGSC0003DMT400028530 Potato nucleus 23.77 20.77
PGSC0003DMT400056952 Potato nucleus 37.99 20.72
PGSC0003DMT400074158 Potato nucleus 21.57 16.03
PGSC0003DMT400029328 Potato nucleus 26.96 15.78
PGSC0003DMT400029069 Potato mitochondrion 0.49 1.64
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0006950GO:GO:0006970GO:GO:0008150GO:GO:0008152
GO:GO:0009056GO:GO:0009058GO:GO:0009408GO:GO:0009409GO:GO:0009414GO:GO:0009605
GO:GO:0009607GO:GO:0009628GO:GO:0009651GO:GO:0009719GO:GO:0009987GO:GO:0010120
GO:GO:0010200GO:GO:0010508GO:GO:0019748GO:GO:0034605GO:GO:0042742GO:GO:0043565
GO:GO:0044212GO:GO:0050832GO:GO:0070370InterPro:IPR003657InterPro:IPR036576UniProt:M1AU56
PFAM:PF03106EnsemblPlantsGene:PGSC0003DMG400011633PGSC:PGSC0003DMG400011633EnsemblPlants:PGSC0003DMT400030388PFscan:PS50811PANTHER:PTHR31221
PANTHER:PTHR31221:SF1SMART:SM00774SUPFAM:SSF118290UniParc:UPI00029537A3InterPro:WRKY_domInterPro:WRKY_dom_sf
SEG:seg:::::
Description
WRKY-type transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400011633]
Coordinates
chr9:-:11719670..11722785
Molecular Weight (calculated)
45476.9 Da
IEP (calculated)
7.529
GRAVY (calculated)
-0.916
Length
408 amino acids
Sequence
(BLAST)
001: MASSGGNMNT FMNSFNSFSS SQFMTSSFSD LLSDNNDNNN NNNKNWGFSD DRIKSFPMIN SSSSPASPSS YLAFPHSLSP SMLLDSPVLF NNSNTLSSPT
101: TGSFGNLNSK EGNSRSSEFS FQSRPATSSS IFQSSAPRNS LEDLMTRQQQ TTEFSTAKTG VKSEVAPIQS FSQENMPNNP APVHYCQPSQ YVREQKAEDG
201: YNWRKYGQKQ VKGSENPRSY YKCTFPNCPT KKKVERNLDG HITEIVYKGS HNHPKPQSTR RSSSQSVQNL AYSNLDVTNQ PNAFHENGQR DSFAVTDNSS
301: ASFGDEDVDQ GSPISKSGEN EPEAKRWKGD NENEVISSAS RTVREPRIVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR LAIPTPYNIS CFSHYYILLC
401: KELNDQLA
Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)
001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP
Arabidopsis Description
WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.