CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67903
CDX74352
CDX75979
CDX76661
CDX82333
CDX89148
CDX91889
CDX92261
CDX93962
CDX99326
CDY11447
CDY25117
CDY68488
CDY71738

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	CDX75979	AT3G18690.1	15990873
AT2G38470.1	CDX82333	AT3G18690.1	15990873
AT2G38470.1	CDX92261	AT3G18690.1	15990873
AT2G38470.1	CDX99326	AT3G18690.1	15990873
AT2G38470.1	CDY68488	AT3G18690.1	15990873
AT2G38470.1	CDY71738	AT3G18690.1	15990873
AT2G38470.1	CDX75979	AT3G18690.1	18650934
AT2G38470.1	CDX82333	AT3G18690.1	18650934
AT2G38470.1	CDX92261	AT3G18690.1	18650934
AT2G38470.1	CDX99326	AT3G18690.1	18650934
AT2G38470.1	CDY68488	AT3G18690.1	18650934
AT2G38470.1	CDY71738	AT3G18690.1	18650934
AT2G38470.1	CDX75979	AT3G18690.1	21203436
AT2G38470.1	CDX82333	AT3G18690.1	21203436
AT2G38470.1	CDX92261	AT3G18690.1	21203436
AT2G38470.1	CDX99326	AT3G18690.1	21203436
AT2G38470.1	CDY68488	AT3G18690.1	21203436
AT2G38470.1	CDY71738	AT3G18690.1	21203436
AT2G38470.1	CDX67903	AT3G62770.1	21395886
AT2G38470.1	CDX76661	AT3G62770.1	21395886
AT2G38470.1	CDX89148	AT3G62770.1	21395886
AT2G38470.1	CDX93962	AT3G62770.1	21395886
AT2G38470.1	CDY11447	AT3G62770.1	21395886
AT2G38470.1	CDY25117	AT3G62770.1	21395886
AT2G38470.1	CDX74352	AT4G01370.1	18650934
AT2G38470.1	CDX91889	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017117.1-P	Field mustard	nucleus	95.01	98.7
CDY69941	Canola	nucleus, plastid	96.26	97.06
CDY65564	Canola	nucleus, plastid	84.62	86.41
CDX91470	Canola	nucleus, plastid	85.45	86.34
CDY14459	Canola	nucleus, plastid	82.33	80.82
CDY07729	Canola	nucleus	79.21	80.55
AT2G38470.1	Thale cress	nucleus, plastid	83.78	77.65
CDY48650	Canola	nucleus, plastid	69.23	75.17
CDY05016	Canola	nucleus	31.39	47.34
CDY14055	Canola	nucleus	30.35	45.77
CDX97834	Canola	nucleus	34.1	45.43
CDY29685	Canola	nucleus	32.85	45.14
GSMUA_Achr3P09940_001	Banana	nucleus	34.1	44.81
CDY10720	Canola	nucleus	34.3	44.24
Solyc09g014990.2.1	Tomato	nucleus	48.44	44.05
CDX84848	Canola	nucleus	34.3	43.65
GSMUA_Achr11P...	Banana	nucleus	42.2	43.56
KRH17125	Soybean	nucleus	51.98	43.48
KRH72765	Soybean	nucleus	52.39	43.45
CDY24017	Canola	nucleus	33.89	43.12
VIT_08s0058g00690.t01	Wine grape	nucleus	47.4	41.3
GSMUA_Achr6P32720_001	Banana	nucleus	39.09	41.23
KRG98195	Soybean	nucleus	46.36	41.14
PGSC0003DMT400030388	Potato	nucleus	34.51	40.69
KRH30155	Soybean	nucleus	46.15	40.51
CDY02051	Canola	nucleus	23.08	40.07
Zm00001d043025_P001	Maize	nucleus	45.95	39.82
TraesCS1A01G298600.1	Wheat	nucleus, plastid	41.79	39.8
KXG33637	Sorghum	nucleus	45.74	39.57
HORVU1Hr1G070250.2	Barley	nucleus, plastid	42.0	39.45
TraesCS1D01G292700.1	Wheat	nucleus, plastid	41.58	39.45
Os01t0826400-01	Rice	extracellular	45.32	39.28
TraesCS1B01G308200.1	Wheat	nucleus, plastid	41.37	39.1
TraesCS3A01G347500.1	Wheat	nucleus	45.11	38.61
TraesCS3D01G341100.1	Wheat	nucleus	44.91	38.5
TraesCS3B01G379200.1	Wheat	nucleus	44.7	38.46
Os05t0474800-01	Rice	nucleus	43.66	36.71
HORVU3Hr1G088200.4	Barley	nucleus, plastid	45.11	36.23
Zm00001d038451_P001	Maize	nucleus	41.58	35.91
Zm00001d012482_P001	Maize	nucleus	44.07	35.75
CDX98138	Canola	nucleus	33.68	35.45
CDY36419	Canola	nucleus	33.47	35.38
CDY33788	Canola	nucleus	31.81	34.62
CDY53941	Canola	nucleus	31.39	34.32
GSMUA_Achr8P01790_001	Banana	nucleus	40.54	34.21
CDX96873	Canola	nucleus	32.43	33.48
CDY62213	Canola	nucleus	32.22	33.41
CDY16122	Canola	nucleus	30.35	32.59
OQU78174	Sorghum	nucleus	42.83	31.74
CDX74281	Canola	nucleus	29.73	31.71
CDY45169	Canola	nucleus	32.02	31.69
CDY03003	Canola	nucleus	32.02	31.49
CDY70490	Canola	nucleus	33.47	31.08
CDY42736	Canola	nucleus	33.47	30.43
CDY37191	Canola	nucleus	30.56	30.25
CDY69527	Canola	nucleus	33.89	30.02
CDX89336	Canola	nucleus	33.06	29.78
CDX94335	Canola	nucleus	31.81	29.77
CDX89317	Canola	nucleus	32.85	29.59
CDX94303	Canola	nucleus	32.64	29.51
CDX97359	Canola	nucleus	32.85	29.42
CDX92808	Canola	nucleus	31.81	29.2
CDY46692	Canola	nucleus	31.81	29.14
CDY11947	Canola	nucleus	34.3	28.75
CDX91348	Canola	nucleus	23.7	28.36
CDY14304	Canola	nucleus	32.22	28.34
CDY72350	Canola	nucleus	8.52	28.28
CDX74976	Canola	nucleus	23.28	28.14
CDY36788	Canola	nucleus	36.17	27.88
CDX93073	Canola	nucleus	21.21	27.72
CDY49388	Canola	nucleus	37.21	26.68
CDY50038	Canola	nucleus	23.7	26.15
CDY62292	Canola	nucleus	10.19	23.56
CDY36463	Canola	nucleus	19.33	23.31
CDY32799	Canola	nucleus	28.69	22.96
CDY62293	Canola	nucleus	9.56	22.66
CDY47543	Canola	nucleus	12.89	21.91
CDY26094	Canola	nucleus	18.92	21.88
CDY08253	Canola	nucleus	18.92	21.88
CDX79729	Canola	nucleus	14.55	21.74
CDY46769	Canola	nucleus	14.55	21.67
CDY46768	Canola	nucleus	14.55	21.67
CDY23265	Canola	nucleus	20.17	21.23
CDY47546	Canola	nucleus	16.63	20.36
CDY13396	Canola	nucleus	20.79	18.83
CDY59057	Canola	nucleus	17.05	18.34
CDY10548	Canola	nucleus	16.42	18.33
CDY67588	Canola	nucleus	16.22	15.12
CDY54360	Canola	nucleus	17.05	14.75
CDX72277	Canola	nucleus	21.0	13.78
CDY52777	Canola	nucleus, plastid	3.33	9.36

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:A0A078G181	UniProt:A0A078G181	EnsemblPlants:CDY18383
ProteinID:CDY18383	ProteinID:CDY18383.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00005371001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0004EEB2C8	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

BnaA04g22040DBnaA04g22040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G181]

Coordinates

chrLK032085:-:160446..162396

Molecular Weight (calculated)

52777.9 Da

IEP (calculated)

7.384

GRAVY (calculated)

-0.974

Length

481 amino acids

Sequence
(BLAST)

001: MAASSLLTMD NNRTRQNMNG SVNWSQQTAR ASPASLEDLE IPPKFRSFAP SSISTSPSTC FSPSAFLDSP AFVSSSANVL ASPTTGALIT NESNHKSITE
101: EEKTNKNNNS LSLFDFSFQT QPSGLSAPTT TTNSSVLQWS QTDTRPNNNT HQAVPYNGRE QRKGEDGYNW RKYGQKQVKG SENPRSYYKC TFPSCPTKKK
201: VEMSLDGQIT EIVYKGSHNH PKPQSTRRSS SSSSTFHSGG LDHHGSSDSF AIQQEDNTTS GSLGDDELSV ISRDEEDCGS EPEAKRWKGE NETNGGNGDG
301: SKTVREPRIV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTTTG CPVRKHVERA SNDMRAVITT YEGKHNHDVP AARGSGYSTN RLAQDPSSAP
401: IRPNAIAGHS HYTTSSQAPY TLQMLQHNNN NTNAGPFGYA MNNNNNNFQT QQNNFVGGGF SIAKEEPNEE SSSSFFDSFL S

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.