Factsheet for TraesCS1D01G292700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G184500.1
TraesCS1B01G192600.3
TraesCS1D01G192200.1
TraesCS2A01G298100.1
TraesCS2B01G314600.1
TraesCS2D01G296200.1
TraesCS5A01G027100.1
TraesCS5B01G026300.1
TraesCS5D01G034800.1
TraesCS7A01G326900.1
TraesCS7B01G227600.1
TraesCS7D01G323700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	TraesCS2A01G298100.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS2B01G314600.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS2D01G296200.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS5A01G027100.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS5B01G026300.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS5D01G034800.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS7A01G326900.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS7B01G227600.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS7D01G323700.1	AT3G18690.1	15990873
AT2G38470.1	TraesCS2A01G298100.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS2B01G314600.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS2D01G296200.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS5A01G027100.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS5B01G026300.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS5D01G034800.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS7A01G326900.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS7B01G227600.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS7D01G323700.1	AT3G18690.1	18650934
AT2G38470.1	TraesCS2A01G298100.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS2B01G314600.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS2D01G296200.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS5A01G027100.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS5B01G026300.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS5D01G034800.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS7A01G326900.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS7B01G227600.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS7D01G323700.1	AT3G18690.1	21203436
AT2G38470.1	TraesCS1A01G184500.1	AT4G01370.1	18650934
AT2G38470.1	TraesCS1B01G192600.3	AT4G01370.1	18650934
AT2G38470.1	TraesCS1D01G192200.1	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G298600.1	Wheat	nucleus, plastid	95.27	95.64
TraesCS1B01G308200.1	Wheat	nucleus, plastid	94.87	94.5
HORVU1Hr1G070250.2	Barley	nucleus, plastid	91.12	90.23
Os05t0474800-01	Rice	nucleus	63.71	56.47
TraesCS3D01G341100.1	Wheat	nucleus	57.0	51.52
Zm00001d038451_P001	Maize	nucleus	55.42	50.45
OQU78174	Sorghum	nucleus	61.54	48.07
GSMUA_Achr3P09940_001	Banana	nucleus	32.35	44.81
Bra005104.1-P	Field mustard	nucleus	38.86	43.11
Bra017117.1-P	Field mustard	nucleus	39.05	42.76
KRG98195	Soybean	nucleus	45.36	42.44
CDY07729	Canola	nucleus	39.45	42.28
KRH17125	Soybean	nucleus	47.73	42.09
Bra000064.1-P	Field mustard	nucleus	39.25	42.07
KRH72765	Soybean	nucleus	48.13	42.07
KRH30155	Soybean	nucleus	45.36	41.97
CDY18383	Canola	nucleus, plastid	39.45	41.58
CDX91470	Canola	nucleus, plastid	38.86	41.39
PGSC0003DMT400043204	Potato	nucleus	43.59	41.39
CDY69941	Canola	nucleus, plastid	38.86	41.3
CDY65564	Canola	nucleus, plastid	38.26	41.19
CDY14459	Canola	nucleus, plastid	39.45	40.82
Solyc06g066370.2.1	Tomato	nucleus	43.0	40.75
AT2G38470.1	Thale cress	nucleus, plastid	40.63	39.69
GSMUA_Achr6P32720_001	Banana	nucleus	35.5	39.47
VIT_06s0004g07500.t01	Wine grape	nucleus	46.94	39.47
TraesCS1D01G072900.1	Wheat	nucleus	35.5	38.79
CDY48650	Canola	nucleus, plastid	31.76	36.34
GSMUA_Achr8P01790_001	Banana	nucleus	37.08	32.98
TraesCS5D01G406500.1	Wheat	nucleus	24.26	29.29
TraesCS5D01G116100.1	Wheat	nucleus	27.02	27.57
TraesCS4D01G151700.1	Wheat	nucleus	25.64	26.8
TraesCS2D01G190500.1	Wheat	nucleus	23.27	25.76
TraesCS2D01G198100.4	Wheat	nucleus	29.98	23.82
TraesCS7D01G239800.2	Wheat	nucleus	28.4	22.93
TraesCS5D01G266300.1	Wheat	nucleus	30.18	22.57
TraesCS7D01G287200.1	Wheat	nucleus	22.29	21.65
TraesCS2D01G332300.1	Wheat	nucleus	31.16	21.5

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF76	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS1D01G292700
EnsemblPlants:TraesCS1D01G292700.1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:+:391860638..391863338

Molecular Weight (calculated)

54486.3 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.787

Length

507 amino acids

Sequence
(BLAST)

001: MAMTPPSSFP PASPSSYLNM SSGFLDSSAL LSPSLFPSPT TGAFPSHQFN WMGTPENDGL QGSANQDEQR QYSGFTFHTT APLPAATATA SSFLQSSMPM
101: AQLVGDSYEQ QQQQQPWSYQ DTGMNGGARP AEFTTQFEPP TTSTIMATTA PDALGNGGYS VPAPSGAAGY RVQSRRPSSD DGYNWRKYGQ KQMKGSENPR
201: SYYKCSFAGC PTKKKVEQAP DGQVTEIVYK GTHNHPKPQN PRRGSGSAVS SSYALQCHGA NDASSDALSG TPENSSASYG DDETNGVSSR PAGAVGGGED
301: QFDDEEPDCK RWRSDGEATI MAVGNRTVRE PRVVVQTMSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TTPNCPVRKH VERASQDLRA VVTTYEGKHN
401: HDVPAARGSA AAAARYRAAT LQPAASYLQG AGGYSSLRPD GFGGVDGGGA PAEMSGFALS GFGNPSYSYA SMQEQQQQQQ SDAMYYDASR AKDEPRDDMF
501: FGHSLMF

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.