Factsheet for VIT_06s0004g07500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17125	Soybean	nucleus	68.66	72.0
KRH72765	Soybean	nucleus	68.82	71.55
PGSC0003DMT400043204	Potato	nucleus	56.05	63.3
Solyc06g066370.2.1	Tomato	nucleus	56.05	63.18
KRG98195	Soybean	nucleus	55.89	62.18
VIT_08s0058g00690.t01	Wine grape	nucleus	56.72	61.96
KRH30155	Soybean	nucleus	56.05	61.68
GSMUA_Achr6P32720_001	Banana	nucleus	45.27	59.87
GSMUA_Achr3P09940_001	Banana	nucleus	34.16	56.28
GSMUA_Achr11P...	Banana	nucleus	41.46	53.65
Os01t0826400-01	Rice	extracellular	47.76	51.89
Zm00001d043025_P001	Maize	nucleus	47.26	51.35
KXG33637	Sorghum	nucleus	47.26	51.26
TraesCS3B01G379200.1	Wheat	nucleus	46.6	50.27
TraesCS3D01G341100.1	Wheat	nucleus	46.77	50.27
TraesCS3A01G347500.1	Wheat	nucleus	46.27	49.64
TraesCS1A01G298600.1	Wheat	nucleus, plastid	39.47	47.13
TraesCS1D01G292700.1	Wheat	nucleus, plastid	39.47	46.94
HORVU1Hr1G070250.2	Barley	nucleus, plastid	39.8	46.88
TraesCS1B01G308200.1	Wheat	nucleus, plastid	39.3	46.56
HORVU3Hr1G088200.4	Barley	nucleus, plastid	45.94	46.24
Zm00001d012482_P001	Maize	nucleus	45.44	46.21
Zm00001d038451_P001	Maize	nucleus	42.62	46.14
Os05t0474800-01	Rice	nucleus	42.62	44.93
GSMUA_Achr8P01790_001	Banana	nucleus	40.46	42.81
OQU78174	Sorghum	nucleus	42.95	39.91
VIT_01s0011g00220.t01	Wine grape	nucleus	30.18	36.26
VIT_08s0040g03070.t01	Wine grape	nucleus	27.69	35.01
VIT_14s0108g01280.t01	Wine grape	nucleus	29.85	34.16
VIT_19s0090g01720.t01	Wine grape	nucleus	33.33	34.07
VIT_12s0057g00550.t01	Wine grape	nucleus	21.89	32.75
VIT_00s0463g00010.t01	Wine grape	nucleus	32.5	32.03
VIT_04s0023g00470.t01	Wine grape	nucleus	25.04	30.08
VIT_19s0015g01870.t01	Wine grape	nucleus	37.15	30.03
VIT_04s0008g06600.t01	Wine grape	nucleus	21.06	25.87
VIT_11s0037g00150.t01	Wine grape	nucleus	19.73	23.85

Protein Annotations

EntrezGene:100243352	wikigene:100243352	MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	ProteinID:CCB43432
ProteinID:CCB43432.1	UniProt:F6GUH8	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100243352	wikigene:LOC100243352
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290
TIGR:TC54887	TIGR:TC56397	TIGR:TC58017	UniParc:UPI0001983775	ArrayExpress:VIT_06s0004g07500	EnsemblPlantsGene:VIT_06s0004g07500
EnsemblPlants:VIT_06s0004g07500.t01	unigene:Vvi.6999	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002272040	RefSeq:XP_002272040.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:8290089..8292826

Molecular Weight (calculated)

66288.0 Da

IEP (calculated)

6.888

GRAVY (calculated)

-0.915

Length

603 amino acids

Sequence
(BLAST)

001: MGSSSGSLET SANSHPLFSF SSFMSTSYSD LLTSADEDPV TTTTGDKGAV GRGLSDRIAE RTGSGVPKFK SIPPPSLPIS PPPISPSSYF SIPAGLSPAE
101: LLDSPVLLST SNILPSPTTG TFPSQGFNWR SNSNSNQQDV KREDKNYLDF SFQPQARPST TSASMFQPST TTITTEQALR GQQPAWSFQE PTKQDSFSSE
201: KTTVKSEFGS YQSFSPEIAT IQTNTQSNGN GNNGFQSDYG SYHASSQSIR EQRRSEDGYN WRKYGQKQVK GSENPRSYYK CTYPNCPTKK KVERSLEGQV
301: TEIVYKGTHN HPKPQSTRRS SLSSSQTIQA SNPPNNEVPD QPFVAHGTGQ MDSVATPENS SISMGDDDFE QSSQKSKSGG DDFDEDEPEA KRWKKESENE
401: GISAPGSRTV REPRVVVQTT SDIDILDDGY RWRKYGQKVV KGNPNPRSYY KCTNPGCPVR KHVERASHDL RAVITTYEGK HNHDVPAARG SGSHSVNRPL
501: PLPDTTAAAT TNNNMPMAIR PSIMTHLPNN STTNPLRHVR HPTSEAQAAP FTLEMLQSPD GFGFSSFGNS MATYMNQPQH QDNVFSRTKE EPRDDMLFES
601: LLC

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.