Factsheet for VIT_00s0463g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0090g01720.t01	Wine grape	nucleus	51.47	53.39
GSMUA_Achr7P25840_001	Banana	nucleus	21.41	53.04
GSMUA_Achr4P13970_001	Banana	nucleus	44.28	52.83
GSMUA_Achr3P29850_001	Banana	nucleus	42.48	45.14
Os07t0583700-01	Rice	nucleus	41.83	41.42
KXG36569	Sorghum	nucleus	41.01	41.08
Zm00001d006702_P001	Maize	nucleus	40.85	40.98
Zm00001d021947_P002	Maize	nucleus	40.69	40.62
VIT_12s0057g00550.t01	Wine grape	nucleus	23.69	35.98
VIT_06s0004g07500.t01	Wine grape	nucleus	32.03	32.5
TraesCS2B01G217400.2	Wheat	nucleus	32.19	32.08
TraesCS2A01G189700.1	Wheat	nucleus	31.86	31.86
HORVU2Hr1G036320.1	Barley	nucleus	31.86	31.71
VIT_01s0011g00220.t01	Wine grape	nucleus	25.65	31.27
TraesCS2D01G198100.4	Wheat	nucleus	31.7	30.41
VIT_14s0108g01280.t01	Wine grape	nucleus	25.65	29.79
VIT_08s0058g00690.t01	Wine grape	nucleus	26.8	29.71
VIT_08s0040g03070.t01	Wine grape	nucleus	21.9	28.09
VIT_19s0015g01870.t01	Wine grape	nucleus	32.68	26.81
VIT_04s0023g00470.t01	Wine grape	nucleus	20.75	25.3
VIT_04s0008g06600.t01	Wine grape	nucleus	18.46	23.01
VIT_11s0037g00150.t01	Wine grape	nucleus	17.16	21.04

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:AFJ54619	ProteinID:AFJ54619.1	ProteinID:CCB57413	ProteinID:CCB57413.1
UniProt:F6HRV5	EMBL:FN596045	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EMBL:JQ782602	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00021082DE	ArrayExpress:VIT_00s0463g00010
EnsemblPlantsGene:VIT_00s0463g00010	EnsemblPlants:VIT_00s0463g00010.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:29694084..29699952

Molecular Weight (calculated)

66505.9 Da

IEP (calculated)

6.547

GRAVY (calculated)

-0.720

Length

612 amino acids

Sequence
(BLAST)

001: MSPAKLPISR SPCLTIPPGL SPSSLLESPV LLSNMKVEPS PTTGSLPKNQ IVLDPVGSAS FSTTADGSTG NEINVGNFEF RPHNRSSLGS GLSSLGHLVE
101: PSPTTGSLPK NQIVLDPVGS ASFSTTADGS TGNEINVGNF EFRPHNRSSL GSGLSSLGHL ASASNLQHHE ARVEVQDRGQ TQSFATSSYV KSDKAADPSV
201: TAPNPQASMV ASSASLPIKI DYGKLQQSQG FDIGVQAALS EQKESNPSFT AEKSSEDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCQVKK QLERSHDGKV
301: TEIIYKGRHD HPKPQARRRF AVGAALSIHE ETQDKFSYLT NIEHKTSHAH GQTSYHGELD SVPEVPPFTA SDDEQEADED DVDDPDSKRR RLECGGLDVI
401: PLHKPTREPR VVVQTVSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPAARSNTHD TVGSSIYSTS
501: MDAILRTKLE ETDTISLDLG VGISLSPDNG SNERPQTMEA DPDRTQIHIV GSDCSKLIQA TSSSAYYSIS NDSVDQREIR ENQGGNFTFE APPLNRSSNP
601: YPQSMGSLLM GP

Best Arabidopsis Sequence Match ( AT4G26640.1 )
(BLAST)

001: MILLPEPSPT TGSLFKPRPV HISASSSSYT GRGFHQNTFT EQKSSEFEFR PPASNMVYAE LGKIRSEPPV HFQGQGHGSS HSPSSISDAA GSSSELSRPT
101: PPCQMTPTSS DIPAGSDQEE SIQTSQNDSR GSTPSILADD GYNWRKYGQK HVKGSEFPRS YYKCTHPNCE VKKLFERSHD GQITDIIYKG THDHPKPQPG
201: RRNSGGMAAQ EERLDKYPSS TGRDEKGSGV YNLSNPNEQT GNPEVPPISA SDDGGEAAAS NRNKDEPDDD DPFSKRRRME GAMEITPLVK PIREPRVVVQ
301: TLSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTAHGCP VRKHVERASH DPKAVITTYE GKHDHDVPTS KSSSNHEIQP RFRPDETDTI SLNLGVGISS
401: DGPNHASNEH QHQNQQLVNQ THPNGVNFRF VHASPMSSYY ASLNSGMNQY GQRETKNETQ NGDISSLNNS SYPYPPNMGR VQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.