Factsheet for VIT_04s0008g06600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0037g00150.t01	Wine grape	nucleus	44.6	43.89
GSMUA_Achr10P...	Banana	nucleus	32.79	34.04
GSMUA_AchrUn_...	Banana	nucleus	29.33	31.44
TraesCS7A01G294800.2	Wheat	nucleus	32.18	30.27
TraesCS7B01G185400.2	Wheat	nucleus	31.98	30.08
GSMUA_Achr9P19580_001	Banana	nucleus	34.01	29.93
TraesCS7D01G287200.1	Wheat	nucleus	31.77	29.89
EES14907	Sorghum	nucleus	33.6	29.0
Zm00001d050023_P001	Maize	extracellular	33.2	28.8
VIT_01s0011g00220.t01	Wine grape	nucleus	28.92	28.29
HORVU7Hr1G066670.4	Barley	nucleus	31.57	26.72
VIT_14s0108g01280.t01	Wine grape	nucleus	28.31	26.38
VIT_12s0057g00550.t01	Wine grape	nucleus	19.96	24.32
VIT_08s0040g03070.t01	Wine grape	nucleus	23.42	24.11
VIT_04s0023g00470.t01	Wine grape	nucleus	22.61	22.11
Os03t0758950-01	Rice	nucleus, plastid	19.35	21.64
VIT_08s0058g00690.t01	Wine grape	nucleus	24.24	21.56
VIT_06s0004g07500.t01	Wine grape	nucleus	25.87	21.06
VIT_19s0090g01720.t01	Wine grape	nucleus	23.01	19.15
VIT_00s0463g00010.t01	Wine grape	nucleus	23.01	18.46
VIT_19s0015g01870.t01	Wine grape	nucleus	23.42	15.42
Os03t0758900-01	Rice	plastid	0.2	0.25

Protein Annotations

EntrezGene:100262898	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB46865	ProteinID:CCB46865.1	UniProt:F6H336
EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF34
SMART:SM00774	SUPFAM:SSF118290	TIGR:TC67080	UniParc:UPI0002109803	ArrayExpress:VIT_04s0008g06600	EnsemblPlantsGene:VIT_04s0008g06600
EnsemblPlants:VIT_04s0008g06600.t01	unigene:Vvi.12722	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_010648749.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:6569931..6576445

Molecular Weight (calculated)

54315.8 Da

IEP (calculated)

8.806

GRAVY (calculated)

-0.837

Length

491 amino acids

Sequence
(BLAST)

001: MADHRSQTLA PVPHPSHYDH DCPSFSDLFN GVTHSEFPTI QNVGFQGQFG MSHQEVLASV TAKAAQAPVQ MDQPVCMHSS TESSSVPKSE ISMPNSTPGV
101: ENPLALPQDN ASIKQRADQK DFSDHKTQLA DTVVMNIPND GYNWRKYGQK QVKSTESSRS YYRCTYSDCD AKKKVQQCHQ SGFVTGVIYK GFHNHDPPPK
201: IRCTQLRKSA AVSPVEGSDT VYPTAQKLGN SDLSNYKSEP GKASVAMPEL ERQNSSNSDS NTGIKAEEEI GDVVERKRRM KPQEPLVLPS RRKQRSSCSS
301: NEIVKKEVGE CGDEQKPKQR MKEGGLACSA PLFKTIKEPK IVVHAAGDVG ISSDGYRWRK YGQKMVKGNP HPRSYYRCTS AGCPVRKHVE RDTDDKTTII
401: VTYEGKHDHD RPVPKKRHSP RTAAFLIAAA AAMNNNQCKK TETLANQRSS NQQSADMEHD LTCQKALELG GEKALESART LLSIGIEIKP C

Best Arabidopsis Sequence Match ( AT4G30935.1 )
(BLAST)

001: MEEDTGIDEA KTYTVEKSEK VEPEKDGLSQ FRDEEKSLGA DMEDLHDETV RETLGKDQVQ GVRENSSVEP NVEDVLEVNE TDSVKETVVS AIVPVDEVEE
101: NRQVETSPSL AASSDSLTVT PCLSLDPATA STAQDLPLVS VPTKQEQRSD SPVVNRLSVT PVPRTPARDG YNWRKYGQKQ VKSPKGSRSY YRCTYTECCA
201: KKIECSNDSG NVVEIVNKGL HTHEPPRKTS FSPREIRVTT AIRPVSEDDT VVEELSIVPS GSDPSASTKE YICESQTLVD RKRHCENEAV EEPEPKRRLK
301: KDNSQSSDSV SKPGKKNKFV VHAAGDVGIC GDGYRWRKYG QKMVKGNPHP RNYYRCTSAG CPVRKHIETA VENTKAVIIT YKGVHNHDMP VPKKRHGPPS
401: SMLVAAAAPT SMRTRTDDQV NIPTSSQCSV GRESEKQSKE ALDVGGEKVM ESARTLLSIG FEIKQC

Arabidopsis Description

WRKY32Probable WRKY transcription factor 32 [Source:UniProtKB/Swiss-Prot;Acc:P59583]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.