Factsheet for VIT_19s0015g01870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0094g00900.t01
VIT_06s0004g03540.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	VIT_05s0094g00900.t01	AT2G43790.1	24830428
AT4G26440.1	VIT_06s0004g03540.t01	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62550	Soybean	nucleus	66.89	65.57
PGSC0003DMT400056952	Potato	nucleus	65.42	65.24
KRH56379	Soybean	nucleus	66.89	64.3
Solyc07g066220.2.1	Tomato	nucleus	62.87	63.46
Bra028939.1-P	Field mustard	nucleus	28.55	47.44
CDY11947	Canola	nucleus	34.99	45.47
CDY36788	Canola	nucleus	37.13	44.39
GSMUA_Achr5P23900_001	Banana	nucleus	32.84	43.36
GSMUA_Achr6P03500_001	Banana	nucleus	28.42	41.16
CDX94335	Canola	nucleus	28.28	41.05
AT5G56270.1	Thale cress	nucleus	37.8	41.05
Bra002828.1-P	Field mustard	nucleus	37.0	41.01
CDY49388	Canola	nucleus	36.6	40.69
GSMUA_Achr11P...	Banana	nucleus	35.12	40.49
CDX89336	Canola	nucleus	28.82	40.26
Bra026438.1-P	Field mustard	nucleus	28.82	40.26
GSMUA_Achr5P04150_001	Banana	nucleus	33.11	39.02
AT4G26440.1	Thale cress	nucleus	29.62	38.91
GSMUA_Achr4P01600_001	Banana	nucleus	34.32	38.44
CDY69527	Canola	nucleus	27.88	38.31
HORVU0Hr1G004890.10	Barley	nucleus	30.7	38.04
CDY42736	Canola	nucleus	26.81	37.81
Bra019105.1-P	Field mustard	nucleus	26.81	37.81
CDY32799	Canola	nucleus	30.16	37.44
VIT_06s0004g07500.t01	Wine grape	nucleus	30.03	37.15
HORVU5Hr1G072020.1	Barley	nucleus	33.65	37.13
TraesCS5A01G258100.1	Wheat	nucleus	33.11	36.48
VIT_08s0058g00690.t01	Wine grape	nucleus	26.94	36.41
TraesCS5D01G266300.1	Wheat	nucleus	32.98	36.28
TraesCS5B01G257300.1	Wheat	nucleus	32.57	35.79
Os08t0499300-01	Rice	nucleus	32.17	35.61
VIT_01s0011g00220.t01	Wine grape	nucleus	23.73	35.26
HORVU7Hr1G049130.1	Barley	nucleus, plastid	11.39	34.69
Zm00001d025669_P001	Maize	nucleus	30.7	34.54
OQU80981	Sorghum	nucleus	31.1	33.87
VIT_19s0090g01720.t01	Wine grape	nucleus	26.27	33.22
KXG26525	Sorghum	nucleus	32.84	33.11
TraesCS2B01G351600.1	Wheat	nucleus	32.17	32.88
VIT_04s0023g00470.t01	Wine grape	nucleus	22.12	32.87
VIT_14s0108g01280.t01	Wine grape	nucleus	23.19	32.83
TraesCS2A01G330500.1	Wheat	nucleus	32.31	32.79
VIT_00s0463g00010.t01	Wine grape	nucleus	26.81	32.68
TraesCS7D01G239800.2	Wheat	nucleus	27.48	32.64
Zm00001d003331_P001	Maize	nucleus	30.7	32.57
VIT_12s0057g00550.t01	Wine grape	nucleus	17.56	32.51
Zm00001d052847_P001	Maize	nucleus	31.64	32.37
KXG35872	Sorghum	nucleus	25.2	32.25
TraesCS2D01G332300.1	Wheat	nucleus	31.77	32.24
TraesCS7B01G136400.2	Wheat	nucleus, plastid	27.35	32.23
Zm00001d020881_P002	Maize	nucleus	25.07	31.75
VIT_08s0040g03070.t01	Wine grape	nucleus	20.11	31.45
Zm00001d006001_P006	Maize	nucleus	24.13	31.36
TraesCS7A01G240800.1	Wheat	nucleus	27.35	31.34
Os09t0481700-01	Rice	nucleus	25.87	30.49
Os04t0471700-00	Rice	nucleus	31.64	23.65
VIT_04s0008g06600.t01	Wine grape	nucleus	15.42	23.42
VIT_11s0037g00150.t01	Wine grape	nucleus	15.42	23.05

Protein Annotations

EntrezGene:100261730	wikigene:100261730	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB62069	ProteinID:CCB62069.1
UniProt:F6I4X4	EMBL:FN596747	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100261730	wikigene:LOC100261730	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00019859B8
ArrayExpress:VIT_19s0015g01870	EnsemblPlantsGene:VIT_19s0015g01870	EnsemblPlants:VIT_19s0015g01870.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002265612
RefSeq:XP_002265612.1	RefSeq:XP_010644699.1	RefSeq:XP_010644700.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:-:10665189..10669055

Molecular Weight (calculated)

80273.8 Da

IEP (calculated)

6.008

GRAVY (calculated)

-0.663

Length

746 amino acids

Sequence
(BLAST)

001: MAGIDDHVAI IGDWVPPSPS PRMFFSMMLG DDVDSRATSE PTNENRNEGF FLGSPEQIMS GDTDKKTLAG DLGDQLTEFG AFSDQKLSSR GGLVERIAAR
101: AGFNAPRLNT ESIRSADLSL NPDVRSPYLT IPPGLSPTTL LESPVFLSTS HAQPSPTTGK FPFIPNVNNR SSMLIPAAPD RSKEDLFEDF NTSSFAFKPV
201: AESGSSFFNN GASKISAATI PQQSFPSIEV SVQSENSLPS QIMEPTKVHS QSRNTFHVQA DLSRSSTEKD IPATIASDPT VLGTVGSAEH SPPLDEQQDE
301: DGDQRGGVDN MVGGAPAEDG YNWRKYGQKQ VKGSEFPRSY YKCTHPNCQV KKKVERSHEG HITEIIYKGA HNHSKPPPNR RSAIGSSNPL SDMQLDIPEQ
401: AGPHGGDGDP VWASTQKGTA AGAPDWRHDN LEVTSSSLGP EFCNTSTTLQ GQNGAPFESS DAVDASSTFS NDEDDDDRVT HGSVSLGYDG EGDESESKRR
501: KVEAYATEMS GATRAIREPR VVVQTTSEVD ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN AGCTVRKHVE RASHDLKSVI TTYEGKHNHD VPAARNSSHV
601: NSGASGTGPA QAAAAAAAAA TVQTHVHRSD SSQVHNMARF DRPPSFGTFN LPGRQQLGPS HGFSFGMNQP GLANLGMAGL GPTQGKLPAL PVHPYLGQQR
701: QVNEMGFMLP KGEPKVEPMS EPSLNLSSGS AVYHQIMSRL PLGPQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.