Factsheet for TraesCS5B01G257300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS7A01G111300.1
TraesCS7B01G009200.1
TraesCS7D01G106400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	TraesCS7A01G111300.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7B01G009200.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7D01G106400.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS4A01G106400.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4B01G197800.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4D01G198600.1	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G258100.1	Wheat	nucleus	96.17	96.45
TraesCS5D01G266300.1	Wheat	nucleus	96.02	96.17
HORVU5Hr1G072020.1	Barley	nucleus	93.52	93.93
Os09t0481700-01	Rice	nucleus	63.18	67.77
KXG35872	Sorghum	nucleus	57.73	67.24
Zm00001d006001_P006	Maize	nucleus	53.61	63.41
Zm00001d020881_P002	Maize	nucleus	53.9	62.14
TraesCS7B01G136400.2	Wheat	nucleus, plastid	45.8	49.13
Bra028939.1-P	Field mustard	nucleus	31.37	47.44
GSMUA_Achr5P23900_001	Banana	nucleus	39.47	47.43
GSMUA_Achr6P03500_001	Banana	nucleus	34.9	46.02
GSMUA_Achr11P...	Banana	nucleus	43.59	45.75
GSMUA_Achr5P04150_001	Banana	nucleus	42.42	45.5
GSMUA_Achr4P01600_001	Banana	nucleus	43.74	44.59
CDY11947	Canola	nucleus	37.41	44.25
CDY36788	Canola	nucleus	39.32	42.79
Bra002828.1-P	Field mustard	nucleus	41.53	41.9
CDY49388	Canola	nucleus	41.09	41.58
AT5G56270.1	Thale cress	nucleus	41.83	41.34
CDY32799	Canola	nucleus	34.46	38.94
CDX94335	Canola	nucleus	28.87	38.13
TraesCS2B01G351600.1	Wheat	nucleus	40.8	37.95
Bra026438.1-P	Field mustard	nucleus	29.46	37.45
CDX89336	Canola	nucleus	29.31	37.27
TraesCS1B01G088900.2	Wheat	nucleus	24.74	36.68
Bra019105.1-P	Field mustard	nucleus	28.42	36.48
CDY42736	Canola	nucleus	28.42	36.48
CDY69527	Canola	nucleus	29.16	36.46
AT4G26440.1	Thale cress	nucleus	30.34	36.27
TraesCS3B01G379200.1	Wheat	nucleus	28.13	34.17
VIT_19s0015g01870.t01	Wine grape	nucleus	35.79	32.57
TraesCS5B01G108500.1	Wheat	nucleus	23.71	32.53
TraesCS5B01G401800.1	Wheat	nucleus	19.73	31.83
TraesCS4B01G165900.2	Wheat	nucleus	22.53	31.42
KRH62550	Soybean	nucleus	34.9	31.14
KRH56379	Soybean	nucleus	34.17	29.9
TraesCS1B01G308200.1	Wheat	nucleus, plastid	22.39	29.86
TraesCS2B01G209200.1	Wheat	nucleus	20.47	29.7
TraesCS2B01G217400.2	Wheat	nucleus	26.51	29.32
PGSC0003DMT400029328	Potato	nucleus	26.95	26.26
Solyc10g005680.1.1	Tomato	nucleus	25.63	24.75
TraesCS7B01G185400.2	Wheat	nucleus	17.53	22.8

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS5B01G257300	EnsemblPlants:TraesCS5B01G257300.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:439723292..439727593

Molecular Weight (calculated)

73676.2 Da

IEP (calculated)

6.317

GRAVY (calculated)

-0.773

Length

679 amino acids

Sequence
(BLAST)

001: MAGTSDRGSL MEDWMAMPPT PSPRTLMSSF LNEDFSSGQF SNFFGEHVSN KPHDQSEKRG ELVDLREQVP AQSATDTATP QKDFSLQPNS FNANQKSNPQ
101: GSLAERRASR AGFSIPKIDT SRVGSSTVIR SPIAIPPGLS PTTLLESPVF LYNAMAQPSP TTGKLFVASE ANSTMPPDST FSNDVFSFQP HSGPTSYSNV
201: EKGYTVCHQN QSLSNIHQQG SSLQSSFTAA KDSADETIVK PKTSDSVFSD NHSSEEQEDD EGDQNEEYSS ATNSNPAEDG YNWRKYGQKQ VKSSEHPRSY
301: YKCTHPDCPV KKKVERSQDG QITEIVYKSS HNHPLPPPNR RSGIPSLQIN DPQVHLLEKP GLHTGVNTAS LWENGKSECI QDMQGVEGRP AAGPPVSAYG
401: DTSIMESQDA ADVSSTLSNE IDRATQGTIS LDCDVGEDET ESKRRKLDAL AAVTIPTATT TSSIDMVAAA SRAVREPRVV VQTTSEVDIL DDGYRWRKYG
501: QKVVKGNPNP RSYYKCTHQG CSVRKHVERA SHDLKSVITT YEGKHNHEVP AARNSGNAGS APASAPQANL SHRRQEQAQG SYSQFGGASP FGSFGLPPRG
601: HLGAAGNFHF GMAPPGMSMP PMPAARHPSM MQGYPGLMMQ EGQMMQEGQM KAEPDQQSGF AASSAYQQMM GRPPFGPQM

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.