CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89222
KXG39626

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	EER89222	AT2G43790.1	24830428
AT4G26440.1	KXG39626	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006001_P006	Maize	nucleus	88.51	89.9
Zm00001d020881_P002	Maize	nucleus	88.85	87.95
Os09t0481700-01	Rice	nucleus	71.36	65.72
HORVU5Hr1G072020.1	Barley	nucleus	67.92	58.58
TraesCS5A01G258100.1	Wheat	nucleus	67.07	57.75
TraesCS5B01G257300.1	Wheat	nucleus	67.24	57.73
TraesCS5D01G266300.1	Wheat	nucleus	66.9	57.52
OQU80981	Sorghum	nucleus	51.97	44.23
GSMUA_Achr4P01600_001	Banana	nucleus	44.25	38.74
GSMUA_Achr5P04150_001	Banana	nucleus	41.51	38.23
GSMUA_Achr11P...	Banana	nucleus	41.85	37.71
CDY32799	Canola	nucleus	38.77	37.6
GSMUA_Achr6P03500_001	Banana	nucleus	33.1	37.48
GSMUA_Achr5P23900_001	Banana	nucleus	36.02	37.17
CDY11947	Canola	nucleus	34.65	35.19
CDY36788	Canola	nucleus	37.39	34.94
Bra028939.1-P	Field mustard	nucleus	26.76	34.74
AT5G56270.1	Thale cress	nucleus	40.31	34.21
Bra002828.1-P	Field mustard	nucleus	39.28	34.03
CDY49388	Canola	nucleus	38.94	33.83
KXG26525	Sorghum	nucleus	38.25	30.14
Bra026438.1-P	Field mustard	nucleus	26.59	29.03
CDX89336	Canola	nucleus	26.42	28.84
CDX94335	Canola	nucleus	25.39	28.79
AT4G26440.1	Thale cress	nucleus	27.44	28.17
CDY69527	Canola	nucleus	25.9	27.81
Bra019105.1-P	Field mustard	nucleus	24.7	27.22
CDY42736	Canola	nucleus	24.7	27.22
KXG21728	Sorghum	nucleus	23.84	26.89
KXG33637	Sorghum	nucleus	24.87	26.08
VIT_19s0015g01870.t01	Wine grape	nucleus	32.25	25.2
EES16036	Sorghum	nucleus	20.75	24.4
KRH62550	Soybean	nucleus	31.56	24.18
KRH56379	Soybean	nucleus	30.87	23.2
PGSC0003DMT400029328	Potato	nucleus	27.1	22.67
KXG36569	Sorghum	nucleus	23.33	22.26
EER94675	Sorghum	nucleus	18.52	21.69
Solyc10g005680.1.1	Tomato	nucleus	25.73	21.34
EER93417	Sorghum	nucleus	15.27	20.99
OQU78174	Sorghum	nucleus	22.64	20.34
EES14907	Sorghum	nucleus	14.41	14.76

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A1B6QD73	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlants:KXG35872	ProteinID:KXG35872
ProteinID:KXG35872.1	ProteinID:OQU89673.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86
SMART:SM00774	EnsemblPlantsGene:SORBI_3002G242500	SUPFAM:SSF118290	UniParc:UPI0003C717D1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:63158788..63162729

Molecular Weight (calculated)

62310.3 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.584

Length

583 amino acids

Sequence
(BLAST)

001: MAGASNHGSL MDEWLPPPTP SPRTLMSSFL NEEFSSEPFS GFFSEHGTNK PHDQSEKSRE VVNSSEEVPA HAVNDPFQKG FSLKPNLFSA NHKSNSNGGL
101: AERRAARAGF SVAKIDTSRV GSSAVIRSPV SIPPGLSPTT LLESPVFLYN KMAQPSPTTG TLPFLMATND KSTIPPAAKI TEDSPFDNDV FSFQPHLGSE
201: ATGFSTAEKD YGAYQQKQSL SNIHQQESSL QSSFTAVKDN TSATIVKAKT SSSMFSDSHY SADQQQADET NIKVQGKGVE ARSAAFLPVS AHSDASLLES
301: QDAVDVSSTL SNEEERATHG TVSIECDGDE DETESKRRKL ELDALGATAI TTTSTTSTID MGPGASRAVR EPRVVVQTTS EVDILDDGYR WRKYGQKVVK
401: GNPNPRSYYK CTHPGCSVRK HVERASHDLK SVITTYEGKH NHEVPAARNS GQGSSGSGSA PSAPQAGGSH RRQESAQASF AHFGTTSPFG SFGLPPSRQL
501: GPTTGNFRFG MVPPGMTIPM PSLGSLAPTK MVGSSSSMQG YPGLMMPGEP KVEPVSQPLF PMANASPPAY QQMLSRPPFG HQM

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.