Factsheet for GSMUA_Achr4P01600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P19320_001
GSMUA_Achr5P06640_001
GSMUA_Achr6P33100_001
GSMUA_Achr9P04280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	GSMUA_Achr10P...	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr2P19320_001	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr5P06640_001	AT2G43790.1	24830428
AT4G26440.1	GSMUA_Achr6P33100_001	AT3G45640.1	24830428
AT4G26440.1	GSMUA_Achr9P04280_001	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P04150_001	Banana	nucleus	67.27	70.77
GSMUA_Achr11P...	Banana	nucleus	64.11	66.0
GSMUA_Achr6P03500_001	Banana	nucleus	46.85	60.58
GSMUA_Achr5P23900_001	Banana	nucleus	44.29	52.21
Bra028939.1-P	Field mustard	nucleus	33.18	49.22
CDY11947	Canola	nucleus	40.09	46.52
CDY36788	Canola	nucleus	43.09	45.99
Zm00001d006001_P006	Maize	nucleus	38.44	44.6
AT5G56270.1	Thale cress	nucleus	45.8	44.4
KXG35872	Sorghum	nucleus	38.74	44.25
Bra002828.1-P	Field mustard	nucleus	44.59	44.13
CDY49388	Canola	nucleus	44.14	43.82
TraesCS5B01G257300.1	Wheat	nucleus	44.59	43.74
TraesCS5A01G258100.1	Wheat	nucleus	44.44	43.72
TraesCS5D01G266300.1	Wheat	nucleus	44.44	43.66
GSMUA_Achr3P09940_001	Banana	nucleus	23.87	43.44
HORVU5Hr1G072020.1	Barley	nucleus	43.99	43.34
HORVU7Hr1G049130.1	Barley	nucleus, plastid	15.92	43.27
Zm00001d020881_P002	Maize	nucleus	38.14	43.12
Os08t0499300-01	Rice	nucleus	43.24	42.73
HORVU0Hr1G004890.10	Barley	nucleus	37.39	41.36
OQU80981	Sorghum	nucleus	42.49	41.31
CDY32799	Canola	nucleus	36.79	40.77
Os09t0481700-01	Rice	nucleus	38.59	40.6
Zm00001d003331_P001	Maize	nucleus	42.49	40.26
Zm00001d025669_P001	Maize	nucleus	39.79	39.97
TraesCS2B01G351600.1	Wheat	nucleus	43.39	39.59
CDY42736	Canola	nucleus	31.38	39.51
Bra019105.1-P	Field mustard	nucleus	31.38	39.51
TraesCS7D01G239800.2	Wheat	nucleus	37.24	39.49
TraesCS2D01G332300.1	Wheat	nucleus	43.54	39.46
CDY69527	Canola	nucleus	32.13	39.41
TraesCS2A01G330500.1	Wheat	nucleus	43.39	39.32
TraesCS7B01G136400.2	Wheat	nucleus, plastid	37.09	39.02
Bra026438.1-P	Field mustard	nucleus	31.23	38.95
CDX89336	Canola	nucleus	31.08	38.76
KXG26525	Sorghum	nucleus	42.64	38.38
CDX94335	Canola	nucleus	29.58	38.33
TraesCS7A01G240800.1	Wheat	nucleus	37.09	37.94
GSMUA_Achr6P32720_001	Banana	nucleus	25.98	37.94
Zm00001d052847_P001	Maize	nucleus	41.44	37.86
AT4G26440.1	Thale cress	nucleus	32.28	37.85
GSMUA_Achr11P...	Banana	nucleus	25.68	36.7
GSMUA_Achr7P25840_001	Banana	nucleus	13.51	36.44
GSMUA_Achr4P14270_001	Banana	nucleus	24.62	36.28
GSMUA_Achr4P13970_001	Banana	nucleus	27.78	36.06
GSMUA_Achr7P00610_001	Banana	nucleus	25.08	34.65
GSMUA_Achr10P...	Banana	nucleus	23.87	34.34
VIT_19s0015g01870.t01	Wine grape	nucleus	38.44	34.32
GSMUA_Achr4P07230_001	Banana	nucleus	24.17	34.26
GSMUA_Achr6P16760_001	Banana	nucleus	24.47	33.82
GSMUA_Achr8P01790_001	Banana	nucleus	28.53	33.33
GSMUA_Achr7P26450_001	Banana	nucleus	23.87	33.26
PGSC0003DMT400056952	Potato	nucleus	37.09	33.02
Solyc07g066220.2.1	Tomato	nucleus	36.64	33.02
KRH62550	Soybean	nucleus	37.54	32.85
KRH56379	Soybean	nucleus	36.94	31.7
GSMUA_Achr1P17160_001	Banana	nucleus	19.22	31.14
GSMUA_Achr3P29850_001	Banana	nucleus	26.88	31.08
GSMUA_Achr4P16840_001	Banana	nucleus	18.17	28.74
Os04t0471700-00	Rice	nucleus	42.64	28.46
GSMUA_AchrUn_...	Banana	nucleus	18.77	27.29
GSMUA_Achr10P...	Banana	nucleus	17.27	24.31
GSMUA_Achr9P19580_001	Banana	nucleus	18.62	22.22

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G01600_001	EnsemblPlants:GSMUA_Achr4P01600_001	EnsemblPlants:GSMUA_Achr4T01600_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0SK77	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002951E25	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Putative Probable WRKY transcription factor 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01600_001]

Coordinates

chr4:+:1348530..1353295

Molecular Weight (calculated)

72656.2 Da

IEP (calculated)

5.999

GRAVY (calculated)

-0.568

Length

666 amino acids

Sequence
(BLAST)

001: MAKTDDNNAM IDDRPPPNPS SRAFLSNSIN EEFGSKSFSD FLTENGNVGF RWTCENQKMG INTKIEEAEA GNDFSNDASV QPKPFDAPKS CSAVGLAERM
101: AARKGFNVPK LDTARIPPAT IVSSSEICSP YLTIPPGLSP TMLLESPVFL ANCLAQPSPT TGKFNFADID SNPMSLSLSA VSTKSDNDLF EDIPEAFSFK
201: PPLESHSHLS STEEKVMLWM PGQTSHCKSC QFVSILILES TQSVLYYILS TSRILAQLTH DKGFSDSIVG TDYAPTVDTQ QDGEADLREL SAAVGTPAED
301: GYNWRKYGQK QVKGSEYPRS YYKCTNPKCQ VKKKVERSHE GHITEIIYKG AHNHPKPHTS RPPVAAEQCD PSNSLQQNQE GTHLSPEAIG VSSTMSNDEE
401: EDDRATHGSV SLGCDGEGDE TESKRRKLEA SAIEMSAASR AVREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNPGCT VRKHIERASH
501: DLKSVITTYE GKHNHDVPVA RNSGQPSSAQ SNTTANAAPQ HNGLLQRPEP TQDGFVRFDG HAALGTFGFP GREQLGQPSS FPFSMAQPGL ANLAIAGLGP
601: MAAAMKMPVV PPLHPYLSHL QLTEAGLMVP KLEPKEESMP DSELPVLNAA SIYHQMMSRL PLGPQL

Best Arabidopsis Sequence Match ( AT5G56270.1 )
(BLAST)

001: MAGFDENVAV MGEWVPRSPS PGTLFSSAIG EEKSSKRVLE RELSLNHGQV IGLEEDTSSN HNKDSSQSNV FRGGLSERIA ARAGFNAPRL NTENIRTNTD
101: FSIDSNLRSP CLTISSPGLS PATLLESPVF LSNPLAQPSP TTGKFPFLPG VNGNALSSEK AKDEFFDDIG ASFSFHPVSR SSSSFFQGTT EMMSVDYGNY
201: NNRSSSHQSA EEVKPGSENI ESSNLYGIET DNQNGQNKTS DVTTNTSLET VDHQEEEEEQ RRGDSMAGGA PAEDGYNWRK YGQKLVKGSE YPRSYYKCTN
301: PNCQVKKKVE RSREGHITEI IYKGAHNHLK PPPNRRSGMQ VDGTEQVEQQ QQQRDSAATW VSCNNTQQQG GSNENNVEEG STRFEYGNQS GSIQAQTGGQ
401: YESGDPVVVV DASSTFSNDE DEDDRGTHGS VSLGYDGGGG GGGGEGDESE SKRRKLEAFA AEMSGSTRAI REPRVVVQTT SDVDILDDGY RWRKYGQKVV
501: KGNPNPRSYY KCTAPGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHGGGGDSG NGNSGGSAAV SHHYHNGHHS EPPRGRFDRQ VTTNNQSPFS
601: RPFSFQPHLG PPSGFSFGLG QTGLVNLSMP GLAYGQGKMP GLPHPYMTQP VGMSEAMMQR GMEPKVEPVS DSGQSVYNQI MSRLPQI

Arabidopsis Description

WRKY2Probable WRKY transcription factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.