Factsheet for TraesCS2B01G351600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G106400.1
TraesCS4B01G197800.1
TraesCS4D01G198600.1
TraesCS7A01G111300.1
TraesCS7B01G009200.1
TraesCS7D01G106400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26440.1	TraesCS7A01G111300.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7B01G009200.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS7D01G106400.1	AT2G43790.1	24830428
AT4G26440.1	TraesCS4A01G106400.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4B01G197800.1	AT3G45640.1	24830428
AT4G26440.1	TraesCS4D01G198600.1	AT3G45640.1	24830428

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G332300.1	Wheat	nucleus	97.12	96.46
TraesCS2A01G330500.1	Wheat	nucleus	96.58	95.92
HORVU0Hr1G004890.10	Barley	nucleus	77.26	93.69
Zm00001d025669_P001	Maize	nucleus	58.49	64.4
Zm00001d003331_P001	Maize	nucleus	61.23	63.58
KXG26525	Sorghum	nucleus	62.19	61.35
GSMUA_Achr5P23900_001	Banana	nucleus	37.26	48.14
GSMUA_Achr6P03500_001	Banana	nucleus	33.42	47.38
Bra028939.1-P	Field mustard	nucleus	27.81	45.21
GSMUA_Achr5P04150_001	Banana	nucleus	37.67	43.44
GSMUA_Achr11P...	Banana	nucleus	38.49	43.43
GSMUA_Achr4P01600_001	Banana	nucleus	39.59	43.39
CDY11947	Canola	nucleus	33.42	42.51
CDY36788	Canola	nucleus	35.34	41.35
TraesCS5B01G257300.1	Wheat	nucleus	37.95	40.8
Os04t0471700-00	Rice	nucleus	54.66	39.98
Bra002828.1-P	Field mustard	nucleus	36.71	39.82
CDY49388	Canola	nucleus	36.58	39.79
CDX94335	Canola	nucleus	27.53	39.11
AT5G56270.1	Thale cress	nucleus	36.71	39.01
Bra026438.1-P	Field mustard	nucleus	28.49	38.95
CDX89336	Canola	nucleus	28.49	38.95
TraesCS7B01G136400.2	Wheat	nucleus, plastid	33.56	38.7
CDY69527	Canola	nucleus	27.95	37.57
Bra019105.1-P	Field mustard	nucleus	27.12	37.43
CDY42736	Canola	nucleus	27.12	37.43
AT4G26440.1	Thale cress	nucleus	28.63	36.8
CDY32799	Canola	nucleus	29.86	36.27
TraesCS1B01G088900.2	Wheat	nucleus	22.47	35.81
TraesCS3B01G379200.1	Wheat	nucleus	25.48	33.27
KRH62550	Soybean	nucleus	33.56	32.19
VIT_19s0015g01870.t01	Wine grape	nucleus	32.88	32.17
TraesCS5B01G108500.1	Wheat	nucleus	21.51	31.72
TraesCS5B01G401800.1	Wheat	nucleus	18.08	31.35
KRH56379	Soybean	nucleus	33.01	31.06
TraesCS1B01G308200.1	Wheat	nucleus, plastid	21.64	31.04
TraesCS2B01G217400.2	Wheat	nucleus	24.93	29.64
TraesCS4B01G165900.2	Wheat	nucleus	19.73	29.57
TraesCS2B01G209200.1	Wheat	nucleus	16.85	26.28
PGSC0003DMT400029328	Potato	nucleus	24.66	25.82
TraesCS7B01G185400.2	Wheat	nucleus	17.81	24.9
Solyc10g005680.1.1	Tomato	nucleus	23.7	24.61

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF86	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS2B01G351600	EnsemblPlants:TraesCS2B01G351600.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:-:500589979..500595188

Molecular Weight (calculated)

77191.4 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.731

Length

730 amino acids

Sequence
(BLAST)

001: MDGHTHLAME WKDQSPGADC SMLPSFLTDP FPADPLVEDC DGGNDGSEGA GFERHGLSVA VGSPQEEGKP ATPHFGQRSS SSSSLSERMQ ARAGFSVAKL
101: SMPGSEYSGA QSPYLTIPPG LSPASLLESP VFLSNAMGQS SPTTGKLLML GDTNNNNNAR LEPPSVEDGP RAFSFKPLDL KSSQYTAEGK KASLPNSQHP
201: SAPSRDVPVK TETNIQTTTR GANPLGHLNQ AQFNNGQDLM KRSYHDCNNK RNRLPADSAT AGGDNNAPPP DHGPPATAVD SEAAKGDYPA AVATAAPAED
301: GYSWRKYGQK QVKHSEYPRS YYKCTHPSCQ VKKKVERSHE GHVTEIIYKG THNHPRPAAQ SRRPAGGAQV HPFNDAQMDA PADNNNNGYG NAGGSQPNAE
401: ARSLWHAGVA VQDWRGDGLE ATSSPSVPGE LCDSSASMQV HDGAARFESP EGGVDVTSAV SDEVDGDDRV AHGSMSQGQG AADTTEGDEL ESKRRKLESC
501: AIDMSTASRA VREPRVVIQT TSEVDILDDG YRWRKYGQKV VKGNPNPRSY YKCTHPGCSV RKHVERASHD LKSVITTYEG KHNHEVPAAR NGGHGSSAAS
601: GGTGASQLSH ARRAEPPSVQ DGLMRLGGCG APFGLPPRDP LGPMGNYPWP PPSLPMPSGL GAVEGLKLPM LSPSLHSVFR QRQAMETAAG FRVPKGEVKD
701: EAAGAGAGGG AAAAAAYPQM MSRLPLGHRM

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.