Factsheet for TraesCS5B01G108500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G104900.1	Wheat	nucleus	98.59	98.19
TraesCS5D01G116100.1	Wheat	nucleus	98.18	97.79
HORVU5Hr1G028340.1	Barley	nucleus	96.97	97.56
EES16036	Sorghum	nucleus	80.61	80.44
Zm00001d035323_P001	Maize	nucleus	80.0	79.84
Zm00001d041740_P001	Maize	nucleus	78.18	78.34
Os12t0507300-00	Rice	nucleus	60.81	75.44
GSMUA_Achr4P14270_001	Banana	nucleus	46.87	51.33
GSMUA_Achr4P07230_001	Banana	nucleus	47.07	49.57
TraesCS4B01G165900.2	Wheat	nucleus	48.28	49.08
GSMUA_Achr6P16760_001	Banana	nucleus	47.07	48.34
GSMUA_Achr10P...	Banana	nucleus	45.05	48.16
GSMUA_Achr7P26450_001	Banana	nucleus	46.26	47.91
KRH01236	Soybean	nucleus	48.48	46.15
KRH44949	Soybean	nucleus	48.48	45.89
VIT_14s0108g01280.t01	Wine grape	nucleus	47.27	44.4
AT3G01080.2	Thale cress	nucleus	37.78	40.56
PGSC0003DMT400003637	Potato	nucleus	36.16	39.69
Solyc02g088340.2.1	Tomato	nucleus	36.57	39.35
CDX74281	Canola	nucleus	34.34	37.69
Solyc03g104810.2.1	Tomato	nucleus	36.16	36.83
PGSC0003DMT400014220	Potato	nucleus	37.78	36.24
TraesCS5B01G401800.1	Wheat	nucleus	28.69	33.73
TraesCS2B01G209200.1	Wheat	nucleus	30.91	32.69
TraesCS1B01G088900.2	Wheat	nucleus	28.48	30.79
TraesCS3B01G379200.1	Wheat	nucleus	32.73	28.98
TraesCS1B01G308200.1	Wheat	nucleus, plastid	27.88	27.11
TraesCS7B01G185400.2	Wheat	nucleus	26.26	24.9
TraesCS7B01G136400.2	Wheat	nucleus, plastid	30.91	24.17
TraesCS5B01G257300.1	Wheat	nucleus	32.53	23.71
TraesCS2B01G217400.2	Wheat	nucleus	27.88	22.48
TraesCS2B01G351600.1	Wheat	nucleus	31.72	21.51

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF55	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:TraesCS5B01G108500	EnsemblPlants:TraesCS5B01G108500.1
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:147436008..147441356

Molecular Weight (calculated)

52612.6 Da

IEP (calculated)

8.156

GRAVY (calculated)

-0.820

Length

495 amino acids

Sequence
(BLAST)

001: MSARPPPPPR PRLSLPPRST GESLFSGTGD ASPGPLTLAS ALFPSDADAD AGGGGGGGAS SGAGATSFTQ LLIGSLSQPP PHQQQQQQER GRGGVARAGP
101: ALSVAPPAGA AVFTVPPGLS PSGFFDSPGL IFSPAMGGFG MSHQQALAQV TAQASHSPLR MFDHTEQTSF SAAATSSGAL QNMSSAANVA EMSEMATTIS
201: NNEHAAFQSA EASHRYQVPA PVDKPADDGY NWRKYGQKVV KGSDCPRSYY KCTHPSCPVK KKVEHAEDGQ ISEIIYKGKH NHQRPPNKRA KDGSSLAAEQ
301: NEQSNDTASG LSGVRRDQEA VYGMSEQLSG LSDGDDKDDG ESRPNEADDR ESDCKRRNIQ ISSQKALTES KIIVQTTSEV DLLDDGYRWR KYGQKVVKGN
401: PHPRSYYKCT FAGCNVRKHI ERASSDPKAV ITTYEGKHNH EPPVGRGSNQ NGGNSNRSQQ KGPNSMSSNQ ASHTRTDLGN VNQGQIGVLQ FKREE

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.