Factsheet for PGSC0003DMT400003637

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088340.2.1	Tomato	nucleus	94.68	92.83
PGSC0003DMT400014220	Potato	nucleus	60.53	52.91
GSMUA_Achr4P14270_001	Banana	nucleus	42.35	42.26
VIT_14s0108g01280.t01	Wine grape	nucleus	47.45	40.61
KRH01236	Soybean	nucleus	46.12	40.0
KRH44949	Soybean	nucleus	45.9	39.58
GSMUA_Achr10P...	Banana	nucleus	39.69	38.66
GSMUA_Achr4P07230_001	Banana	nucleus	39.91	38.3
GSMUA_Achr6P16760_001	Banana	nucleus	40.58	37.97
PGSC0003DMT400072836	Potato	nucleus	42.13	37.4
GSMUA_Achr7P26450_001	Banana	nucleus	39.02	36.82
TraesCS5B01G108500.1	Wheat	nucleus	39.69	36.16
TraesCS5A01G104900.1	Wheat	nucleus	39.69	36.02
TraesCS5D01G116100.1	Wheat	nucleus	39.69	36.02
HORVU5Hr1G028340.1	Barley	nucleus	39.25	35.98
AT3G01080.2	Thale cress	nucleus	36.59	35.79
EES16036	Sorghum	nucleus	39.02	35.48
Zm00001d041740_P001	Maize	nucleus	38.8	35.43
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	12.64	35.4
GSMUA_Achr7P00610_001	Banana	nucleus	37.69	35.27
Zm00001d035323_P001	Maize	nucleus	38.36	34.88
Os12t0507300-00	Rice	nucleus	30.82	34.84
CDX74281	Canola	nucleus	34.59	34.59
Zm00001d047309_P001	Maize	nucleus	36.81	33.4
EER94675	Sorghum	nucleus	36.81	33.33
TraesCS4A01G162500.1	Wheat	nucleus	35.7	32.99
TraesCS4B01G165900.2	Wheat	nucleus	35.03	32.44
TraesCS4D01G151700.1	Wheat	nucleus	34.81	32.37
Os07t0596900-00	Rice	nucleus	29.05	30.32
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	25.06	30.29
HORVU4Hr1G048400.1	Barley	mitochondrion	35.26	30.06
Zm00001d029564_P001	Maize	nucleus	24.39	29.18
PGSC0003DMT400043204	Potato	nucleus	33.92	28.65
PGSC0003DMT400030388	Potato	nucleus	24.83	27.45
HORVU2Hr1G034420.2	Barley	nucleus	26.61	26.79
TraesCS2B01G209200.1	Wheat	nucleus	27.27	26.28
TraesCS2D01G190500.1	Wheat	nucleus	26.61	26.2
PGSC0003DMT400028530	Potato	nucleus	27.05	26.12
TraesCS2A01G182700.1	Wheat	nucleus	26.61	25.81
PGSC0003DMT400060042	Potato	nucleus	25.5	25.16
PGSC0003DMT400015754	Potato	nucleus	23.06	24.64
PGSC0003DMT400076670	Potato	nucleus	32.37	23.9
PGSC0003DMT400057409	Potato	nucleus	30.82	23.32
PGSC0003DMT400029328	Potato	nucleus	31.26	20.23
PGSC0003DMT400074158	Potato	nucleus	24.61	20.22
PGSC0003DMT400056952	Potato	nucleus	32.15	19.39
PGSC0003DMT400029069	Potato	mitochondrion	4.66	17.21

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M0ZM20	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400001434
PGSC:PGSC0003DMG400001434	EnsemblPlants:PGSC0003DMT400003637	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000295C3E6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

WRKY transcription factor-c [Source:PGSC_GENE;Acc:PGSC0003DMG400001434]

Coordinates

chr2:+:45919455..45922325

Molecular Weight (calculated)

50165.2 Da

IEP (calculated)

6.566

GRAVY (calculated)

-0.752

Length

451 amino acids

Sequence
(BLAST)

001: MGETGEASAI SFPSLTIPPR PSFESFFNMS SFSPGPMSLV SSFLSDQSPD SADCPPSFSQ LLAGYEYSGD LAGCQNNSVY NPVNPQLFMI PSGLSPSGFL
101: NSPGFLSPLQ SPFGMSHQQA LAHVTAQAEF SSSYMQAEDQ CSSQVASVEA LGHELSIDPN EFSLQIKECL RTSLDNKPSD NQGKQFEQPE VSQSENKTSF
201: GALDKPACDG YNWRKYGQKK VKASECPRSY YKCTHLKCLV KKKVERSVDG HITEITYNGR HNHDQPTKQR KNGSALDNTD CFGVRPDIST HDWTVMNSSD
301: GYSPSRSDQV PTQMASELLV KRECDETESY LIDVDDEGHD EPDAKRMKTA VMPVASSHVT VAESKIVLQT RSEVDFLDDG YKWRKYGQKV VKGTQHPRSY
401: YRCTYPGCNV RKQVERASTD PKAVITTYDG KHNHDIPTVR NRGTRNKYSQ R

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.