Factsheet for PGSC0003DMT400014220

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g104810.2.1	Tomato	nucleus	88.76	94.24
PGSC0003DMT400003637	Potato	nucleus	52.91	60.53
VIT_14s0108g01280.t01	Wine grape	nucleus	47.09	46.11
KRH01236	Soybean	nucleus	44.57	44.23
KRH44949	Soybean	nucleus	44.38	43.79
GSMUA_Achr4P14270_001	Banana	nucleus	38.18	43.58
GSMUA_Achr4P07230_001	Banana	nucleus	38.76	42.55
GSMUA_Achr10P...	Banana	nucleus	37.79	42.12
GSMUA_Achr6P16760_001	Banana	nucleus	39.15	41.91
PGSC0003DMT400072836	Potato	nucleus	40.12	40.75
GSMUA_Achr7P26450_001	Banana	nucleus	37.6	40.59
AT3G01080.2	Thale cress	nucleus	34.69	38.83
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	12.02	38.51
EES16036	Sorghum	nucleus	36.63	38.1
Zm00001d041740_P001	Maize	nucleus	36.24	37.85
HORVU5Hr1G028340.1	Barley	nucleus	36.05	37.8
TraesCS5B01G108500.1	Wheat	nucleus	36.24	37.78
TraesCS5D01G116100.1	Wheat	nucleus	36.24	37.63
TraesCS5A01G104900.1	Wheat	nucleus	36.24	37.63
Zm00001d035323_P001	Maize	nucleus	35.66	37.1
Os12t0507300-00	Rice	nucleus	28.49	36.84
GSMUA_Achr7P00610_001	Banana	nucleus	34.3	36.72
CDX74281	Canola	nucleus	31.78	36.36
EER94675	Sorghum	nucleus	35.08	36.35
TraesCS4A01G162500.1	Wheat	nucleus	33.72	35.66
Zm00001d047309_P001	Maize	nucleus	34.11	35.41
TraesCS4D01G151700.1	Wheat	nucleus	33.14	35.26
TraesCS4B01G165900.2	Wheat	nucleus	33.14	35.11
HORVU4Hr1G048400.1	Barley	mitochondrion	32.75	31.95
Os07t0596900-00	Rice	nucleus	26.16	31.25
PGSC0003DMT400043204	Potato	nucleus	31.98	30.9
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	22.29	30.83
Zm00001d029564_P001	Maize	nucleus	22.29	30.5
TraesCS2D01G190500.1	Wheat	nucleus	26.94	30.35
TraesCS2B01G209200.1	Wheat	nucleus	27.33	30.13
TraesCS2A01G182700.1	Wheat	nucleus	27.13	30.11
HORVU2Hr1G034420.2	Barley	nucleus	25.97	29.91
PGSC0003DMT400030388	Potato	nucleus	22.67	28.68
PGSC0003DMT400028530	Potato	nucleus	25.78	28.48
PGSC0003DMT400015754	Potato	nucleus	22.29	27.25
PGSC0003DMT400060042	Potato	nucleus	24.03	27.13
PGSC0003DMT400076670	Potato	nucleus	30.23	25.53
PGSC0003DMT400057409	Potato	nucleus	29.07	25.17
PGSC0003DMT400029069	Potato	mitochondrion	5.62	23.77
PGSC0003DMT400074158	Potato	nucleus	23.84	22.4
PGSC0003DMT400056952	Potato	nucleus	32.36	22.33
PGSC0003DMT400029328	Potato	nucleus	27.71	20.52

Protein Annotations

EntrezGene:102593360	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1A3V9	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG401005575	PGSC:PGSC0003DMG401005575	EnsemblPlants:PGSC0003DMT400014220	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF84
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000295E014	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006350163.1
SEG:seg	:	:	:	:	:

Description

DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401005575]

Coordinates

chr3:+:25740422..25746456

Molecular Weight (calculated)

57083.8 Da

IEP (calculated)

7.018

GRAVY (calculated)

-0.663

Length

516 amino acids

Sequence
(BLAST)

001: MGEKFKAPSV SVSSLSTLTI PPKAPFESFF GVGNIPYFSP GPMTLVSSFF SESEYPSFSQ LLAGAMASPL AKPPTLLPEN SSGEEENCKQ GNLGYKQNRP
101: MNLMVAQSPF FTIPTAFSPS GLLNSPGFLS PLQSPFGMSH QQALAHVTAQ AALSQSYLQT QAECHFSSQS TSAQVLGASD PEESSLQPQL DTMSSDQKIK
201: KFELPQLSQS EDKPSFNSVD RPASDGYNWR KYGQKMVKAS ECPRSYYKCT HVKCPVKKKV ERSIDGYITE ITYKGHHNHE LPQPNKRRRD SCAQDGSDCS
301: NINPEIGTHT EIEINGLNGA LVAHSEQVST EMACERPVSN ECEEIEDAAT AAGKEHDDEP NVKRMKTTVE TPILSSSHKA ESESKIVVQT RSEVDILDDG
401: FKWRKYGQKV VKGNHHPSQS WICRSYYRCT YPGCNVRKHV ERASADPKAV ITTYEGKHNH DIPIARNRSH STAQNSSRQL NEQEIATCRP SLLEKVALHT
501: NEIPVCRQLK EEHIAA

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.