CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041740_P001	Maize	nucleus	93.15	93.52
Zm00001d035323_P001	Maize	nucleus	92.54	92.54
HORVU5Hr1G028340.1	Barley	nucleus	80.04	80.69
TraesCS5B01G108500.1	Wheat	nucleus	80.44	80.61
TraesCS5A01G104900.1	Wheat	nucleus	80.44	80.28
TraesCS5D01G116100.1	Wheat	nucleus	80.24	80.08
Os12t0507300-00	Rice	nucleus	62.1	77.19
GSMUA_Achr4P14270_001	Banana	nucleus	47.58	52.21
EER94675	Sorghum	nucleus	49.8	49.6
GSMUA_Achr6P16760_001	Banana	nucleus	47.58	48.96
GSMUA_Achr4P07230_001	Banana	nucleus	46.37	48.94
GSMUA_Achr7P26450_001	Banana	nucleus	46.77	48.54
GSMUA_Achr10P...	Banana	nucleus	44.15	47.3
KRH44949	Soybean	nucleus	48.99	46.46
KRH01236	Soybean	nucleus	48.39	46.15
VIT_14s0108g01280.t01	Wine grape	nucleus	47.38	44.59
AT3G01080.2	Thale cress	nucleus	39.52	42.52
CDX74281	Canola	nucleus	35.69	39.25
PGSC0003DMT400003637	Potato	nucleus	35.48	39.02
Solyc02g088340.2.1	Tomato	nucleus	35.89	38.7
Solyc03g104810.2.1	Tomato	nucleus	36.49	37.24
PGSC0003DMT400014220	Potato	nucleus	38.1	36.63
EER93417	Sorghum	nucleus	28.02	32.78
KXG21728	Sorghum	nucleus	31.25	29.98
KXG33637	Sorghum	nucleus	33.06	29.5
KXG36569	Sorghum	nucleus	31.05	25.2
EES14907	Sorghum	nucleus	26.61	23.2
OQU78174	Sorghum	nucleus	30.24	23.11
OQU80981	Sorghum	nucleus	31.85	23.07
KXG26525	Sorghum	nucleus	33.27	22.3
KXG35872	Sorghum	nucleus	24.4	20.75

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8064126	UniProt:C5YP19	EnsemblPlants:EES16036	ProteinID:EES16036
ProteinID:EES16036.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF55
SMART:SM00774	EnsemblPlantsGene:SORBI_3008G107500	SUPFAM:SSF118290	unigene:Sbi.21067	UniParc:UPI0001A88346	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002442198.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:50603514..50609969

Molecular Weight (calculated)

52424.4 Da

IEP (calculated)

7.964

GRAVY (calculated)

-0.784

Length

496 amino acids

Sequence
(BLAST)

001: MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSSDSDG GGGGGGGANS SSGAATTFTQ LLTGSLAPPP QQQHEAERGR GGGGVARAGP
101: ALSVAPPASA SAGASVFTVP PGLSPSGLLD SPGLLFSPAM GGFGMSHQQA LAQVTAQATH SPLRMFDHLE QPSFSTAATT SGALQHINSA ASMAGISDMT
201: MATANNENAS FQSAEASQRY QVNAPVDKPA DDGYNWRKYG QKVVKGSDCP RSYYKCTHPS CPVKKKVEHA EDGQISEIIY KGKHNHQRPP NKRAKDGNSS
301: AADQNEQSND TTSGLSGAKR DQDNIYGMSE QASGLSDGDD MDDGESRPRE ADDADNESKR RNIQISSQRT LSEPKIIVQT TSEVDLLDDG YRWRKYGQKV
401: VKGNPHPRSY YKCTFAGCNV RKHIERASSD PKAVITTYEG KHNHEPPVGR GNNQNAGISQ QRGQNNISSN QASLPRPDFS NTNQMPLGIL QFKSEQ

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.