Factsheet for Solyc02g088340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003637	Potato	nucleus	92.83	94.68
Solyc03g104810.2.1	Tomato	nucleus	58.26	55.14
GSMUA_Achr4P14270_001	Banana	nucleus	41.96	42.7
VIT_14s0108g01280.t01	Wine grape	nucleus	47.61	41.56
KRH01236	Soybean	nucleus	45.87	40.58
KRH44949	Soybean	nucleus	45.65	40.15
GSMUA_Achr10P...	Banana	nucleus	39.57	39.31
GSMUA_Achr4P07230_001	Banana	nucleus	39.78	38.94
GSMUA_Achr6P16760_001	Banana	nucleus	40.22	38.38
Solyc05g012770.2.1	Tomato	nucleus	42.17	38.19
GSMUA_Achr7P26450_001	Banana	nucleus	39.13	37.66
TraesCS5B01G108500.1	Wheat	nucleus	39.35	36.57
AT3G01080.2	Thale cress	nucleus	36.52	36.44
TraesCS5A01G104900.1	Wheat	nucleus	39.35	36.42
TraesCS5D01G116100.1	Wheat	nucleus	39.35	36.42
HORVU5Hr1G028340.1	Barley	nucleus	38.91	36.38
EES16036	Sorghum	nucleus	38.7	35.89
Zm00001d041740_P001	Maize	nucleus	38.48	35.83
GSMUA_Achr7P00610_001	Banana	nucleus	37.17	35.48
Os12t0507300-00	Rice	nucleus	30.65	35.34
Zm00001d035323_P001	Maize	nucleus	38.04	35.28
CDX74281	Canola	nucleus	34.13	34.81
Zm00001d047309_P001	Maize	nucleus	35.87	33.2
EER94675	Sorghum	nucleus	35.87	33.13
TraesCS4A01G162500.1	Wheat	nucleus	35.0	32.99
TraesCS4D01G151700.1	Wheat	nucleus	34.13	32.37
TraesCS4B01G165900.2	Wheat	nucleus	34.13	32.24
Os07t0596900-00	Rice	nucleus	29.13	31.02
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	24.57	30.29
HORVU4Hr1G048400.1	Barley	mitochondrion	34.78	30.25
Solyc06g066370.2.1	Tomato	nucleus	33.91	29.16
Zm00001d029564_P001	Maize	nucleus	23.7	28.91
Solyc09g014990.2.1	Tomato	nucleus	31.3	27.22
Solyc04g056360.2.1	Tomato	nucleus	23.7	27.18
HORVU2Hr1G034420.2	Barley	nucleus	26.3	27.01
TraesCS2B01G209200.1	Wheat	nucleus	26.96	26.5
TraesCS2D01G190500.1	Wheat	nucleus	26.3	26.42
Solyc07g047960.2.1	Tomato	nucleus	23.48	26.15
TraesCS2A01G182700.1	Wheat	nucleus	26.3	26.02
Solyc05g055750.2.1	Tomato	nucleus	25.87	25.93
Solyc10g084380.1.1	Tomato	nucleus	23.7	25.83
Solyc12g006170.1.1	Tomato	nucleus	22.39	24.82
Solyc12g014610.1.1	Tomato	nucleus	31.52	23.73
Solyc07g065260.2.1	Tomato	nucleus	30.65	23.66
Solyc07g066220.2.1	Tomato	nucleus	31.74	19.76
Solyc07g005650.2.1	Tomato	nucleus	20.43	18.32
Solyc10g005680.1.1	Tomato	nucleus	27.61	18.07

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BBZ0	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc02g088340.2	EnsemblPlants:Solyc02g088340.2.1
UniParc:UPI00027684E8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:50467977..50470729

Molecular Weight (calculated)

50951.1 Da

IEP (calculated)

6.638

GRAVY (calculated)

-0.785

Length

460 amino acids

Sequence
(BLAST)

001: MGETGEASAI SFPSLTIPPR PSFESFFNMS SFSPGPMSLV SSFLSDQSPD SADCPPSFSQ LLAGYEYSGD PPGCQKNSGY NQNGSVNPQL FVIPSGLSPS
101: GFLNSPGFLS PLQSPFGMSH QQALAHVTAQ AEFSSSYMQM QMQMQAQDQC SSQVAPVEAL GHELSIDPKE SSLQIKECLQ SSLDNKPSDN QGKQFEQPEV
201: SQSENKTSSG ALDKPACDGY NWRKYGQKKV KASECPRSYY KCTYLKCLVK KKVERSVDGH ITEITYNGRH NHDQPTKRRK NGSALDNTDC FGVRPDISTH
301: DWTVMNSSDG SSPSRSDQVP TQMVSELLVK RECDETESYL IDVDDEGHDE PDAKRTKTAI ETVASSHVTV AESKIVLQTR SEVDFLDDGY KWRKYGQKVV
401: KGTQHPRSYY RCTYPGCNVR KQVERASTDP KAVITTYEGK HNHDIPTVSV RNRGTRNKYS

Best Arabidopsis Sequence Match ( AT2G03340.1 )
(BLAST)

001: MAEKEEKEPS KLKSSTGVSR PTISLPPRPF GEMFFSGGVG FSPGPMTLVS NLFSDPDEFK SFSQLLAGAM ASPAAAAVAA AAVVATAHHQ TPVSSVGDGG
101: GSGGDVDPRF KQSRPTGLMI TQPPGMFTVP PGLSPATLLD SPSFFGLFSP LQGTFGMTHQ QALAQVTAQA VQGNNVHMQQ SQQSEYPSST QQQQQQQQQA
201: SLTEIPSFSS APRSQIRASV QETSQGQRET SEISVFEHRS QPQNADKPAD DGYNWRKYGQ KQVKGSDFPR SYYKCTHPAC PVKKKVERSL DGQVTEIIYK
301: GQHNHELPQK RGNNNGSCKS SDIANQFQTS NSSLNKSKRD QETSQVTTTE QMSEASDSEE VGNAETSVGE RHEDEPDPKR RNTEVRVSEP VASSHRTVTE
401: PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTPDCGVRKH VERAATDPKA VVTTYEGKHN HDVPAARTSS HQLRPNNQHN TSTVNFNHQQ
501: PVARLRLKEE QIT

Arabidopsis Description

WRKY3Putative WRKY DNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q0WPM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.