CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047309_P001	Maize	nucleus	91.16	91.35
Zm00001d029564_P001	Maize	nucleus	65.06	85.94
TraesCS4A01G162500.1	Wheat	nucleus	74.7	76.23
TraesCS4D01G151700.1	Wheat	nucleus	73.9	75.88
TraesCS4B01G165900.2	Wheat	nucleus	72.89	74.54
HORVU4Hr1G048400.1	Barley	mitochondrion	70.88	66.73
Os03t0444900-00	Rice	endoplasmic reticulum, golgi	46.59	62.2
GSMUA_Achr10P...	Banana	nucleus	46.39	49.89
EES16036	Sorghum	nucleus	49.6	49.8
GSMUA_Achr4P14270_001	Banana	nucleus	44.38	48.89
GSMUA_Achr7P26450_001	Banana	nucleus	46.79	48.74
GSMUA_Achr4P07230_001	Banana	nucleus	45.98	48.72
GSMUA_Achr6P16760_001	Banana	nucleus	46.99	48.55
KRH44949	Soybean	nucleus	47.99	45.7
KRH01236	Soybean	nucleus	47.39	45.38
VIT_14s0108g01280.t01	Wine grape	nucleus	47.39	44.78
AT3G01080.2	Thale cress	nucleus	38.96	42.08
CDX74281	Canola	nucleus	36.55	40.35
PGSC0003DMT400003637	Potato	nucleus	33.33	36.81
Solyc02g088340.2.1	Tomato	nucleus	33.13	35.87
PGSC0003DMT400014220	Potato	nucleus	36.35	35.08
Solyc03g104810.2.1	Tomato	nucleus	34.14	34.98
KXG21728	Sorghum	nucleus	30.32	29.21
EER93417	Sorghum	nucleus	24.7	29.01
KXG33637	Sorghum	nucleus	29.52	26.44
EES14907	Sorghum	nucleus	25.9	22.67
KXG36569	Sorghum	nucleus	27.11	22.09
OQU80981	Sorghum	nucleus	30.12	21.9
KXG26525	Sorghum	nucleus	31.53	21.22
OQU78174	Sorghum	nucleus	26.91	20.65
KXG35872	Sorghum	nucleus	21.69	18.52

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8066274	UniProt:C5WVP7	EnsemblPlants:EER94675	ProteinID:EER94675
ProteinID:EER94675.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF18
SMART:SM00774	EnsemblPlantsGene:SORBI_3001G332500	SUPFAM:SSF118290	UniParc:UPI0001A8319C	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002467677.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:62096233..62103315

Molecular Weight (calculated)

52631.3 Da

IEP (calculated)

7.774

GRAVY (calculated)

-0.758

Length

498 amino acids

Sequence
(BLAST)

001: MAAREASAAA PAPGPAGDGP SRPPRPTLAL PPRSAVESLF ASSGASSAGA AAETSPGPLT LAAALFPDGA PSPAFHGSFT QLLVGAIGSP AAVPSPPSPF
101: AVPPGLSPAT LLGSPGLFSP TGSFEMSHQQ ALAQVTAQAV HSQYNMINHA DYAIPFSSTT TPALITAQHA NSSANVTSAQ EKPALPSHTG NSKIESNEVS
201: QGLKPSAPTF DKPADDGYNW RKYGQKAVKG GEYPRSYYKC THASCPVKKK VERSAEGYIT QIIYRGQHNH QRPPKRRSKD GGGLLNEADD FHENEDTSTR
301: SEPGSQDHSG KHEGSNDGIA GPSVSRRGEG HEQLSGSSDS DEERDDEQRA GNGDPGYANA NRRHVPTPAQ RIIVQTNSEV DLLDDGYRWR KYGQKVVKGN
401: PHPRSYYKCT YQGCDVKKHI ERSSQDPKAV ITTYEGKHSH DVPAARNSSH AAANANCSSS TSVPHRVQSS ASSSRRVADL QSTSSASSML LKEENEIT

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.