Factsheet for PGSC0003DMT400060042

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055750.2.1	Tomato	nucleus	85.12	84.75
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	10.94	31.06
PGSC0003DMT400043204	Potato	nucleus	31.73	27.15
PGSC0003DMT400072836	Potato	nucleus	29.76	26.77
PGSC0003DMT400003637	Potato	nucleus	25.16	25.5
PGSC0003DMT400014220	Potato	nucleus	27.13	24.03
PGSC0003DMT400030388	Potato	nucleus	21.23	23.77
PGSC0003DMT400028530	Potato	nucleus	24.07	23.55
PGSC0003DMT400015754	Potato	nucleus	21.44	23.22
PGSC0003DMT400057409	Potato	nucleus	30.2	23.15
PGSC0003DMT400029069	Potato	mitochondrion	6.13	22.95
PGSC0003DMT400076670	Potato	nucleus	29.32	21.93
PGSC0003DMT400056952	Potato	nucleus	32.82	20.05
PGSC0003DMT400074158	Potato	nucleus	22.32	18.58
PGSC0003DMT400029328	Potato	nucleus	27.13	17.79

Protein Annotations

EntrezGene:102591436	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1C548
PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400023360	PGSC:PGSC0003DMG400023360	EnsemblPlants:PGSC0003DMT400060042	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF1	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000294E061	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023360]

Coordinates

chr5:-:51366941..51372352

Molecular Weight (calculated)

51898.4 Da

IEP (calculated)

7.308

GRAVY (calculated)

-0.828

Length

457 amino acids

Sequence
(BLAST)

001: MQTPTENVGQ ILNCIESRNN EIPQQEEEYS KKQNQQFEQR GIFSSSISAN NSSDDGYTWR KYGQKQVKGS NFPRSYYKCT QQNCLVRKKV ECAPNGQVIE
101: IVYNGAHNHP KTQHLRRKTT DDIYVVAQEN GSSLWRNDQQ FEYNRDVAGL ERIPPAPVLS DASDPMLSNN INVFESHEIS SKLTIFDAED EDLATQEGNF
201: LGDGINEYEL ETKRRKKDGY LAEPSFLSRT VREPKVVLQV ASEIDILEDG YRWRKYGQKV VKGNPNPRSY YKCTSAGCIV RKHVERAADD FKSVITTYEG
301: KHNHEVPSTN KTNGVSGNVR SASMLNNGQQ PCTTTSRKSL KDSNIRVQFQ DLPIPFERKH FMGSEYLRPS FGASYLGDLS FGATSLQLPD FPLPLPLPSR
401: MSFPARQNES HFHLNNNFLL PNGASDSFLA DGNTQHIIAD NNNSRLLKAK DEIQYWT

Best Arabidopsis Sequence Match ( AT1G13960.1 )
(BLAST)

001: MSEKEEAPST SKSTGAPSRP TLSLPPRPFS EMFFNGGVGF SPGPMTLVSN MFPDSDEFRS FSQLLAGAMS SPATAAAAAA AATASDYQRL GEGTNSSSGD
101: VDPRFKQNRP TGLMISQSQS PSMFTVPPGL SPAMLLDSPS FLGLFSPVQG SYGMTHQQAL AQVTAQAVQA NANMQPQTEY PPPSQVQSFS SGQAQIPTSA
201: PLPAQRETSD VTIIEHRSQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNKDNTAN
301: INGSSINNNR GSSELGASQF QTNSSNKTKR EQHEAVSQAT TTEHLSEASD GEEVGNGETD VREKDENEPD PKRRSTEVRI SEPAPAASHR TVTEPRIIVQ
401: TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTTPGCG VRKHVERAAT DPKAVVTTYE GKHNHDLPAA KSSSHAAAAA QLRPDNRPGG LANLNQQQQQ
501: QPVARLRLKE EQTT

Arabidopsis Description

WRKY4Probable WRKY transcription factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI90]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.