Factsheet for PGSC0003DMT400057409

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065260.2.1	Tomato	nucleus	96.98	96.98
PGSC0003DMT400076670	Potato	nucleus	71.64	69.89
KRH14276	Soybean	nucleus	50.84	51.79
KRH73864	Soybean	nucleus	50.67	51.36
VIT_19s0090g01720.t01	Wine grape	nucleus	50.84	51.36
KRG98564	Soybean	nucleus	48.83	50.43
KRH46302	Soybean	nucleus	48.66	50.26
Bra028971.1-P	Field mustard	nucleus	39.77	48.87
CDX89317	Canola	nucleus	43.62	48.69
CDX94303	Canola	nucleus	43.46	48.68
Bra026414.1-P	Field mustard	nucleus	43.62	48.6
CDX92808	Canola	nucleus	42.62	48.47
CDY70490	Canola	nucleus	41.61	47.88
PGSC0003DMT400046529	Potato	endoplasmic reticulum, vacuole	12.92	47.83
GSMUA_Achr7P25840_001	Banana	nucleus	19.8	47.77
CDX97359	Canola	nucleus	42.79	47.49
CDY46692	Canola	nucleus	41.78	47.43
Bra010431.1-P	Field mustard	nucleus	42.79	46.79
AT4G26640.2	Thale cress	nucleus	43.29	46.32
CDY14304	Canola	nucleus	42.45	46.25
GSMUA_Achr4P13970_001	Banana	nucleus	39.77	46.2
GSMUA_Achr3P29850_001	Banana	nucleus	38.09	39.41
KXG36569	Sorghum	nucleus	39.6	38.63
Zm00001d021947_P002	Maize	nucleus	39.43	38.34
Os07t0583700-01	Rice	nucleus	39.43	38.03
KRH49522	Soybean	extracellular, plasma membrane	15.94	37.7
Zm00001d006702_P001	Maize	nucleus	38.42	37.54
PGSC0003DMT400043204	Potato	nucleus	30.87	34.46
Bra019095.1-P	Field mustard	nucleus	41.95	33.16
PGSC0003DMT400030388	Potato	nucleus	21.98	32.11
TraesCS2A01G189700.1	Wheat	nucleus	31.88	31.05
TraesCS2B01G217400.2	Wheat	nucleus	31.88	30.94
HORVU2Hr1G036320.1	Barley	nucleus	31.88	30.89
PGSC0003DMT400003637	Potato	nucleus	23.32	30.82
PGSC0003DMT400060042	Potato	nucleus	23.15	30.2
TraesCS2D01G198100.4	Wheat	nucleus	32.05	29.94
PGSC0003DMT400072836	Potato	nucleus	25.5	29.92
PGSC0003DMT400014220	Potato	nucleus	25.17	29.07
PGSC0003DMT400015754	Potato	nucleus	20.47	28.91
PGSC0003DMT400056952	Potato	nucleus	32.72	26.07
PGSC0003DMT400028530	Potato	nucleus	19.97	25.48
PGSC0003DMT400029069	Potato	mitochondrion	5.2	25.41
PGSC0003DMT400074158	Potato	nucleus	20.64	22.4
PGSC0003DMT400029328	Potato	nucleus	25.84	22.09

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1C0Z4	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400022290
PGSC:PGSC0003DMG400022290	EnsemblPlants:PGSC0003DMT400057409	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000295E848	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

WRKY transcription factor 20 [Source:PGSC_GENE;Acc:PGSC0003DMG400022290]

Coordinates

chr7:+:55318791..55323975

Molecular Weight (calculated)

64912.6 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.740

Length

596 amino acids

Sequence
(BLAST)

001: MEDSHSQQQQ LHSTSEQQLR DGTTSSGGFR HNAAGSNGGA KYKLMTPAML PISRSACITI PPGLSPSSFL ESPVLLSNIK AEPSPTTGSF SKFQTVQGSG
101: GAAAFLLTRG YASGNTYIER KASCFEYKYA GGSSSTSGSL ATEHVTSTGL NQQQNEPLKE VQDQSHPQLL VPSSLAKHEM ETSKELSLSA PINVDASSKE
201: ESLYEPINVD AMNPRDQSSA SMQGSHADHK DVSSVTSDRS SDDGYNWRKY GQKLVKGSEF PRSYYKCTYP NCEVKKIFER SPEGQITEIV YKGSHDHPKP
301: QLSRRFSPGA LMSIQEDKCE KEACFRGQEV YVEDKLNNNV QTSKTEPSST PVSPQQADTG GLEGAGSQMH GTNDDMDEDD QFAKRRKMDG GMDITPVIKP
401: IREPRVVVQT VSEVDILDDG YKWRKYGQKV VRGNPNPRSY YKCTSAGCPV RKHVERASHD PKAVITTYEG KHNHDVPAAK NNNHEMTGSS PVTGSSRIRA
501: GETNSLSLDL GVGTGYRLDN GNNGQLHTLH HQVQVSRSGM MLVQPAAVAA RYGIVHSGMS RFGAIDNRVQ GPSFETLPLQ PSTQSLQNYG KILLGP

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.