Factsheet for Bra028971.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70490	Canola	nucleus	79.79	74.71
Bra026414.1-P	Field mustard	nucleus	63.71	57.76
Bra010431.1-P	Field mustard	nucleus	63.71	56.7
VIT_19s0090g01720.t01	Wine grape	nucleus	53.2	43.73
GSMUA_Achr7P25840_001	Banana	nucleus	22.06	43.32
Bra028707.1-P	Field mustard	nucleus	27.63	42.01
GSMUA_Achr4P13970_001	Banana	nucleus	44.12	41.72
Bra019095.1-P	Field mustard	nucleus	63.71	40.98
Solyc12g014610.1.1	Tomato	nucleus	50.52	40.1
PGSC0003DMT400076670	Potato	nucleus	50.52	40.1
PGSC0003DMT400057409	Potato	nucleus	48.87	39.77
KRH49522	Soybean	extracellular, plasma membrane	20.62	39.68
Solyc07g065260.2.1	Tomato	nucleus	48.66	39.6
Bra021623.1-P	Field mustard	nucleus	25.57	35.43
Os07t0583700-01	Rice	nucleus	44.95	35.28
Bra018325.1-P	Field mustard	nucleus	27.01	35.12
GSMUA_Achr3P29850_001	Banana	nucleus	41.24	34.72
KXG36569	Sorghum	nucleus	43.71	34.7
Zm00001d021947_P002	Maize	nucleus	43.71	34.58
Zm00001d006702_P001	Maize	nucleus	43.3	34.43
Bra022786.1-P	Field mustard	nucleus	25.77	33.07
Bra017117.1-P	Field mustard	nucleus	31.13	32.61
Bra005104.1-P	Field mustard	nucleus	30.72	32.6
Bra028939.1-P	Field mustard	nucleus	29.48	31.85
Bra000064.1-P	Field mustard	nucleus	30.31	31.08
Bra016716.1-P	Field mustard	nucleus	29.48	30.75
Bra026554.1-P	Field mustard	nucleus	29.48	30.11
HORVU2Hr1G036320.1	Barley	nucleus	37.94	29.92
Bra024780.1-P	Field mustard	nucleus	29.9	29.84
Bra019697.1-P	Field mustard	nucleus	30.31	29.82
Bra026869.1-P	Field mustard	nucleus	29.48	29.79
TraesCS2A01G189700.1	Wheat	nucleus	37.53	29.74
TraesCS2B01G217400.2	Wheat	nucleus	37.53	29.64
Bra026438.1-P	Field mustard	nucleus	31.75	28.84
TraesCS2D01G198100.4	Wheat	nucleus	37.32	28.37
Bra030848.1-P	Field mustard	nucleus	11.75	28.08
Bra019105.1-P	Field mustard	nucleus	30.52	27.98
Bra005210.1-P	Field mustard	nucleus	23.09	27.38
Bra023112.1-P	Field mustard	nucleus	23.3	26.9
Bra002828.1-P	Field mustard	nucleus	36.08	26.0
Bra013187.1-P	Field mustard	nucleus	23.09	25.06
Bra010266.1-P	Field mustard	nucleus	18.35	19.47
Bra030847.1-P	Field mustard	nucleus	16.7	18.12
Bra037106.1-P	Field mustard	nucleus	15.05	16.9
Bra024035.1-P	Field mustard	nucleus	19.18	15.79
Bra038006.1-P	Field mustard	nucleus	14.64	10.86

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EnsemblPlantsGene:Bra028971	EnsemblPlants:Bra028971.1	EnsemblPlants:Bra028971.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
UniProt:M4EJK5	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000253FE6D	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

AT4G26640 (E=2e-075) WRKY20, AtWRKY20 | WRKY20; transcription factor

Coordinates

chrA03:-:5650951..5653083

Molecular Weight (calculated)

53882.5 Da

IEP (calculated)

7.926

GRAVY (calculated)

-0.909

Length

485 amino acids

Sequence
(BLAST)

001: MSPAKLPISR STCITTIPPG LSPTSFLESP VLLSNIKAEP SPTTGSLFKP HAVHANSSSY TARTIRHNIL DEKNSNESFE FRPPPASTMF YAELVDKQRS
101: EAHSFKHSPS SATEAASSSE ISPQNALPHQ TTPPGSERSD QDESRGSAPS TLADDGYNWR KYGQKHVKGS EFPRSYYKCT HPNCEVKKVF ERSHEGQITE
201: IVYKGTHDHP KPQPSRRNSG GLVMPAQEER LDKCSSLNGR DGNYTYNLSP PVEPNGNDDG GDLANRNNDD VEDNDPFSKR RKVDGAMEVT ALVKPIREPR
301: VVVQTLSEVD ILDDGYKWRK YGQKVVRGNP NPRSYYKCTA TGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPMVRSNNSH HELLAPRFRP EETTSTVSLH
401: LGVGIASGCP DHTSNEHPHQ QKPAGFMFVH GPSMGSYYAN SLNGLRDNTI WSLEEDGLNK PTKVTQPKEK EKQRLFASTL YLDSS

Best Arabidopsis Sequence Match ( AT4G26640.2 )
(BLAST)

001: MNPQANDRKE FQGDCSATGD LTAKHDSAGG NGGGGARYKL MSPAKLPISR STDITIPPGL SPTSFLESPV FISNIKPEPS PTTGSLFKPR PVHISASSSS
101: YTGRGFHQNT FTEQKSSEFE FRPPASNMVY AELGKIRSEP PVHFQGQGHG SSHSPSSISD AAGSSSELSR PTPPCQMTPT SSDIPAGSDQ EESIQTSQND
201: SRGSTPSILA DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HDGQITDIIY KGTHDHPKPQ PGRRNSGGMA AQEERLDKYP SSTGRDEKGS
301: GVYNLSNPNE QTGNPEVPPI SASDDGGEAA ASNRNKDEPD DDDPFSKRRR MEGAMEITPL VKPIREPRVV VQTLSEVDIL DDGYRWRKYG QKVVRGNPNP
401: RSYYKCTAHG CPVRKHVERA SHDPKAVITT YEGKHDHDVP TSKSSSNHEI QPRFRPDETD TISLNLGVGI SSDGPNHASN EHQHQNQQLV NQTHPNGVNF
501: RFVHASPMSS YYASLNSGMN QYGQRETKNE TQNGDISSLN NSSYPYPPNM GRVQSGP

Arabidopsis Description

WRKY20Probable WRKY transcription factor 20 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.