Factsheet for Bra017117.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000955.1-P
Bra001716.1-P
Bra003509.1-P
Bra007700.1-P
Bra014393.1-P
Bra022345.1-P
Bra037569.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38470.1	Bra001716.1-P	AT3G18690.1	15990873
AT2G38470.1	Bra022345.1-P	AT3G18690.1	15990873
AT2G38470.1	Bra037569.1-P	AT3G18690.1	15990873
AT2G38470.1	Bra001716.1-P	AT3G18690.1	18650934
AT2G38470.1	Bra022345.1-P	AT3G18690.1	18650934
AT2G38470.1	Bra037569.1-P	AT3G18690.1	18650934
AT2G38470.1	Bra001716.1-P	AT3G18690.1	21203436
AT2G38470.1	Bra022345.1-P	AT3G18690.1	21203436
AT2G38470.1	Bra037569.1-P	AT3G18690.1	21203436
AT2G38470.1	Bra003509.1-P	AT3G62770.1	21395886
AT2G38470.1	Bra007700.1-P	AT3G62770.1	21395886
AT2G38470.1	Bra014393.1-P	AT3G62770.1	21395886
AT2G38470.1	Bra000955.1-P	AT4G01370.1	18650934

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18383	Canola	nucleus, plastid	98.7	95.01
CDY69941	Canola	nucleus, plastid	95.68	92.87
Bra005104.1-P	Field mustard	nucleus	84.88	86.0
Bra000064.1-P	Field mustard	nucleus	82.51	80.76
AT2G38470.1	Thale cress	nucleus, plastid	84.67	75.53
Bra028707.1-P	Field mustard	nucleus	32.4	47.02
Bra021623.1-P	Field mustard	nucleus	33.69	44.57
GSMUA_Achr3P09940_001	Banana	nucleus	34.56	43.72
Bra018325.1-P	Field mustard	nucleus	35.21	43.7
Solyc09g014990.2.1	Tomato	nucleus	49.24	43.1
GSMUA_Achr11P...	Banana	nucleus	42.98	42.7
KRH17125	Soybean	nucleus	52.7	42.43
KRH72765	Soybean	nucleus	53.13	42.41
Bra022786.1-P	Field mustard	nucleus	34.56	42.33
KRG98195	Soybean	nucleus	47.95	40.96
VIT_08s0058g00690.t01	Wine grape	nucleus	48.81	40.94
GSMUA_Achr6P32720_001	Banana	nucleus	39.96	40.57
KRH30155	Soybean	nucleus	47.73	40.33
PGSC0003DMT400030388	Potato	nucleus	34.77	39.46
TraesCS1A01G298600.1	Wheat	nucleus, plastid	42.98	39.41
Zm00001d043025_P001	Maize	nucleus	47.08	39.28
HORVU1Hr1G070250.2	Barley	nucleus, plastid	43.2	39.06
TraesCS1D01G292700.1	Wheat	nucleus, plastid	42.76	39.05
KXG33637	Sorghum	nucleus	46.87	39.03
TraesCS1B01G308200.1	Wheat	nucleus, plastid	42.55	38.7
Os01t0826400-01	Rice	extracellular	46.22	38.56
TraesCS3A01G347500.1	Wheat	nucleus	46.44	38.26
TraesCS3D01G341100.1	Wheat	nucleus	46.22	38.15
TraesCS3B01G379200.1	Wheat	nucleus	45.79	37.92
Os05t0474800-01	Rice	nucleus	44.71	36.19
HORVU3Hr1G088200.4	Barley	nucleus, plastid	46.44	35.89
Zm00001d038451_P001	Maize	nucleus	42.55	35.37
Zm00001d012482_P001	Maize	nucleus	45.14	35.24
GSMUA_Achr8P01790_001	Banana	nucleus	41.47	33.68
Bra016716.1-P	Field mustard	nucleus	33.05	32.9
Bra028939.1-P	Field mustard	nucleus	31.32	32.29
Bra019697.1-P	Field mustard	nucleus	34.34	32.25
Bra026869.1-P	Field mustard	nucleus	33.05	31.88
OQU78174	Sorghum	nucleus	44.06	31.43
Bra026554.1-P	Field mustard	nucleus	32.18	31.37
Bra028971.1-P	Field mustard	nucleus	32.61	31.13
Bra024780.1-P	Field mustard	nucleus	32.4	30.86
Bra019105.1-P	Field mustard	nucleus	34.34	30.06
Bra026438.1-P	Field mustard	nucleus	33.91	29.4
Bra026414.1-P	Field mustard	nucleus	33.69	29.16
Bra023112.1-P	Field mustard	nucleus	25.7	28.33
Bra010431.1-P	Field mustard	nucleus	32.61	27.71
Bra005210.1-P	Field mustard	nucleus	24.41	27.63
Bra002828.1-P	Field mustard	nucleus	38.88	26.75
Bra013187.1-P	Field mustard	nucleus	23.97	24.83
Bra030848.1-P	Field mustard	nucleus	10.15	23.15
Bra010266.1-P	Field mustard	nucleus	20.73	21.01
Bra037106.1-P	Field mustard	nucleus	19.44	20.83
Bra019095.1-P	Field mustard	nucleus	32.61	20.03
Bra030847.1-P	Field mustard	nucleus	17.06	17.67
Bra024035.1-P	Field mustard	nucleus	21.6	16.98
Bra038006.1-P	Field mustard	nucleus	17.06	12.08

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	MapMan:26.8.3.3.1	EnsemblPlantsGene:Bra017117	EnsemblPlants:Bra017117.1	EnsemblPlants:Bra017117.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	UniProt:M4DKT6	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF1
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00025449C4	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

AT2G38470 (E=1e-091) WRKY33, ATWRKY33 | WRKY33; transcription factor

Coordinates

chrA04:+:16525354..16527058

Molecular Weight (calculated)

50803.7 Da

IEP (calculated)

7.355

GRAVY (calculated)

-0.954

Length

463 amino acids

Sequence
(BLAST)

001: MNGSVNWSQQ TARASPASLE DLEIPPKFRS FAPSSILTSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNESNHKS ITEEEKTNKN NNSLSLFDFS
101: FQTQPSGLSA PTTTTNSSVL QWSQTDTRPN NSTQQAVPYN GREQRKGEDG YNWRKYGQKQ VKGSENPRSY YKCTFPSCPT KKKVEMSLEG QITEIVYKGS
201: HNHPKPQSTR RSSSSSSTFH SGGLDHHGSS DSFAIQQEDN TTSGSLGDDE LSVISRDEED CGSEPEAKRW KGENETNGGN GNGSKTVREP RIVVQTTSDI
301: DILDDGYRWR KYGQKVVKGN PNPRSYYKCT TTGCPVRKHV ERASNDMRAV ITTYEGKHNH DVPAARGSGY STNRLAQDPS SAPIRPNAIA GHSHYTTSSQ
401: APYTLQMLQH NNNTNAGPFG YAMNNNNNNF QTQQNNFVGG GFSIAKEEPN EESSSSFFDS FLS

Best Arabidopsis Sequence Match ( AT2G38470.1 )
(BLAST)

001: MAASFLTMDN SRTRQNMNGS ANWSQQSGRT STSSLEDLEI PKFRSFAPSS ISISPSLVSP STCFSPSLFL DSPAFVSSSA NVLASPTTGA LITNVTNQKG
101: INEGDKSNNN NFNLFDFSFH TQSSGVSAPT TTTTTTTTTT TTNSSIFQSQ EQQKKNQSEQ WSQTETRPNN QAVSYNGREQ RKGEDGYNWR KYGQKQVKGS
201: ENPRSYYKCT FPNCPTKKKV ERSLEGQITE IVYKGSHNHP KPQSTRRSSS SSSTFHSAVY NASLDHNRQA SSDQPNSNNS FHQSDSFGMQ QEDNTTSDSV
301: GDDEFEQGSS IVSRDEEDCG SEPEAKRWKG DNETNGGNGG GSKTVREPRI VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTI GCPVRKHVER
401: ASHDMRAVIT TYEGKHNHDV PAARGSGYAT NRAPQDSSSV PIRPAAIAGH SNYTTSSQAP YTLQMLHNNN TNTGPFGYAM NNNNNNSNLQ TQQNFVGGGF
501: SRAKEEPNEE TSFFDSFMP

Arabidopsis Description

WRKY33WRKY33 [Source:UniProtKB/TrEMBL;Acc:A0A178VLS4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.