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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000064.1-P
Bra000955.1-P
Bra005104.1-P
Bra017117.1-P
Bra018325.1-P
Bra021623.1-P
Bra022786.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G18690.1 Bra018325.1-P AT2G30250.1 15990873
AT3G18690.1 Bra021623.1-P AT2G30250.1 15990873
AT3G18690.1 Bra022786.1-P AT2G30250.1 15990873
AT3G18690.1 Bra018325.1-P AT2G30250.1 21203436
AT3G18690.1 Bra021623.1-P AT2G30250.1 21203436
AT3G18690.1 Bra022786.1-P AT2G30250.1 21203436
AT3G18690.1 Bra000064.1-P AT2G38470.1 15990873
AT3G18690.1 Bra005104.1-P AT2G38470.1 15990873
AT3G18690.1 Bra017117.1-P AT2G38470.1 15990873
AT3G18690.1 Bra000955.1-P AT4G01370.1 15990873
AT3G18690.1 Bra000955.1-P AT4G01370.1 21203436
AT3G18690.1 Bra000955.1-P AT4G01370.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68488 Canola nucleus 91.24 91.24
CDY71738 Canola nucleus 90.32 90.32
Bra022345.1-P Field mustard nucleus 75.12 75.46
Bra001716.1-P Field mustard nucleus 70.51 71.5
AT3G18690.1 Thale cress nucleus 70.05 68.47
KRH43402 Soybean cytosol, mitochondrion, nucleus, plastid 40.55 44.44
KRH64076 Soybean nucleus 42.4 43.4
KRH53873 Soybean nucleus 44.24 43.24
KRH59551 Soybean plastid 40.55 42.31
GSMUA_Achr10P... Banana nucleus 37.79 40.0
Solyc11g005720.1.1 Tomato nucleus 38.71 36.36
PGSC0003DMT400073800 Potato nucleus 38.25 36.24
GSMUA_Achr6P13020_001 Banana nucleus 38.71 36.05
GSMUA_Achr7P03200_001 Banana nucleus 35.48 35.48
Bra025892.1-P Field mustard nucleus 36.41 34.35
TraesCS5B01G026300.1 Wheat nucleus 36.87 32.92
TraesCS5D01G034800.1 Wheat nucleus 36.87 32.79
TraesCS5A01G027100.1 Wheat nucleus 36.41 31.35
HORVU5Hr1G007670.2 Barley nucleus 34.56 31.25
Os08t0102900-00 Rice nucleus 29.49 30.92
TraesCS7D01G323700.1 Wheat peroxisome 35.48 30.32
TraesCS7A01G326900.1 Wheat peroxisome 35.02 29.8
Bra012276.1-P Field mustard plastid 24.42 29.61
TraesCS7B01G227600.1 Wheat peroxisome 33.64 28.63
Zm00001d025374_P001 Maize plastid 33.18 27.07
Os02t0539500-01 Rice nucleus 32.72 25.82
Zm00001d016748_P001 Maize nucleus 34.1 25.78
Zm00001d003743_P001 Maize nucleus 35.02 24.13
TraesCS2B01G314600.1 Wheat plastid 36.41 24.01
TraesCS2A01G298100.1 Wheat mitochondrion 36.41 24.01
Zm00001d034979_P001 Maize nucleus, plastid 35.02 23.46
TraesCS2D01G296200.1 Wheat mitochondrion 35.48 23.4
HORVU0Hr1G004060.1 Barley cytosol, plastid 19.82 22.05
EES13183 Sorghum nucleus, plastid 29.95 20.63
OQU81546 Sorghum nucleus 32.26 19.89
Os04t0417600-00 Rice cytosol, mitochondrion, nucleus 29.95 15.62
Protein Annotations
EnsemblPlants:Bra037569.1EnsemblPlants:Bra037569.1-PEnsemblPlantsGene:Bra037569InterPro:VQPANTHER:PTHR33143PANTHER:PTHR33143:SF26
PFAM:PF05678SEG:segUniParc:UPI0002544E7BUniProt:M4F906MapMan:35.1:
Description
AT3G18690 (E=3e-081) MKS1 | MKS1 (MAP kinase substrate 1); protein binding
Coordinates
chrA01:+:22003522..22004175
Molecular Weight (calculated)
22735.0 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.193
Length
217 amino acids
Sequence
(BLAST)
001: MDPSESFAGG NPSDQQNQKR QLQICGPRPA PLSVNKDSHK IKKPPKHPAP PPQHRDQAPL YAAREPVVIY AVSPKVVHTT ASDFMNVVQR LTGISSAVFL
101: ESGNGGDVSP AARLALTENA SPRGGKEPVM AAKDETVEIA TAMEEAAEFS GCAPGILSPS PAMLPAASAG IFSQMTTHQG GMFSPGLFSP AGLMSPFGFA
201: SLVASPTFAD LFSHIWD
Best Arabidopsis Sequence Match ( AT3G18690.1 )
(BLAST)
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.