Factsheet for Os04t0417600-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0826400-01
Os05t0343400-01
Os05t0474800-01
Os10t0533600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18690.1	Os05t0343400-01	AT2G30250.1	15990873
AT3G18690.1	Os05t0343400-01	AT2G30250.1	21203436
AT3G18690.1	Os01t0826400-01	AT2G38470.1	15990873
AT3G18690.1	Os05t0474800-01	AT2G38470.1	15990873
AT3G18690.1	Os10t0533600-01	AT4G01370.1	15990873
AT3G18690.1	Os10t0533600-01	AT4G01370.1	21203436
AT3G18690.1	Os10t0533600-01	AT4G01370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025374_P001	Maize	plastid	33.17	51.88
HORVU0Hr1G004060.1	Barley	cytosol, plastid	22.84	48.72
Zm00001d003743_P001	Maize	nucleus	35.58	46.98
TraesCS2B01G314600.1	Wheat	plastid	35.34	44.68
TraesCS2A01G298100.1	Wheat	mitochondrion	34.86	44.07
TraesCS2D01G296200.1	Wheat	mitochondrion	34.38	43.47
Os02t0539500-01	Rice	nucleus	26.92	40.73
OQU81546	Sorghum	nucleus	34.38	40.62
GSMUA_Achr10P...	Banana	nucleus	19.47	39.51
GSMUA_Achr6P13020_001	Banana	nucleus	21.15	37.77
KRH43402	Soybean	cytosol, mitochondrion, nucleus, plastid	16.59	34.85
KRH53873	Soybean	nucleus	17.79	33.33
KRH59551	Soybean	plastid	16.59	33.17
KRH64076	Soybean	nucleus	16.59	32.55
CDX99326	Canola	nucleus	16.35	31.78
CDX92261	Canola	nucleus	16.11	31.16
AT3G18690.1	Thale cress	nucleus	16.59	31.08
Bra022345.1-P	Field mustard	nucleus	16.11	31.02
CDX82333	Canola	nucleus	15.62	30.37
Bra001716.1-P	Field mustard	nucleus	15.62	30.37
CDX75979	Canola	nucleus	15.38	30.19
Bra037569.1-P	Field mustard	nucleus	15.62	29.95
CDY68488	Canola	nucleus	15.38	29.49
Solyc11g005720.1.1	Tomato	nucleus	16.11	29.0
PGSC0003DMT400073800	Potato	nucleus	15.87	28.82
CDY71738	Canola	nucleus	14.9	28.57
Os08t0102900-00	Rice	nucleus	13.46	27.05

Protein Annotations

EnsemblPlants:Os04t0417600-00	EnsemblPlantsGene:Os04g0417600	InterPro:VQ	PANTHER:PTHR33143	PANTHER:PTHR33143:SF1	PFAM:PF05678
ProteinID:BAS89166.1	SEG:seg	UniParc:UPI000393A811	UniProt:A0A0P0WA21	MapMan:35.2	:

Description

VQ motif-containing protein 15Similar to OSIGBa0092M08.12 protein. (Os04t0417600-00)

Coordinates

chr4:+:20624277..20626071

Molecular Weight (calculated)

43261.6 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.152

Length

416 amino acids

Sequence
(BLAST)

001: YLISINQYIK SIISFKRGAV LQHSYVKQNN TLRFSEKRKP TRRIDFSLPF LAFAEVSSTH THTHTHSLSL SLSAPLCLPH VEPFPFPFPT RLAVPPPPRP
101: PPLPRRRRAP AAAELHQLPR ARGGLPGGDG IPVVDVAVAV AVVRAASAAA DDAAAAASGP APPAAQRADG VARHQEAVAR REQQQPPPRA PVIIYDASPK
201: IIHAKPNEFM ALVQRLTGPG SGPPAPPHQG EAQAQDYPMM DEAAAQQFFP PELLLSPSAA MSPAARLATI ERSVRPMPEP APEYVDITNG GGGGGVDDGG
301: LAAILGSIRP GILSPLPSSL PPAAVPGQFS PLPFDASCIS WLNELSPILR AASAGAASSG SGGGGSGGNT SNGGAARPPP SYYADPFVPS PRHLLATPTV
401: PSPATCAELF SNLPDL

Best Arabidopsis Sequence Match ( AT3G18690.1 )
(BLAST)

001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD

Arabidopsis Description

MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.