Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037569.1-P | Field mustard | nucleus | 68.47 | 70.05 |
| CDX75979 | Canola | nucleus | 66.67 | 69.81 |
| CDY68488 | Canola | nucleus | 67.12 | 68.66 |
| CDY71738 | Canola | nucleus | 66.67 | 68.2 |
| Bra001716.1-P | Field mustard | nucleus | 64.86 | 67.29 |
| CDX82333 | Canola | nucleus | 64.86 | 67.29 |
| CDX92261 | Canola | nucleus | 63.96 | 66.05 |
| Bra022345.1-P | Field mustard | nucleus | 63.96 | 65.74 |
| CDX99326 | Canola | nucleus | 63.06 | 65.42 |
| KRH59551 | Soybean | plastid | 42.79 | 45.67 |
| KRH64076 | Soybean | nucleus | 42.79 | 44.81 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 39.64 | 44.44 |
| KRH53873 | Soybean | nucleus | 43.24 | 43.24 |
| GSMUA_Achr10P... | Banana | nucleus | 39.19 | 42.44 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 36.04 | 36.87 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 38.29 | 36.48 |
| PGSC0003DMT400073800 | Potato | nucleus | 36.49 | 35.37 |
| Solyc11g005720.1.1 | Tomato | nucleus | 36.49 | 35.06 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 35.14 | 32.5 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 35.14 | 32.1 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 36.49 | 31.89 |
| AT1G21326.1 | Thale cress | nucleus | 33.33 | 30.96 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 35.14 | 30.95 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 33.78 | 30.74 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 35.14 | 30.59 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 34.68 | 30.2 |
| Os08t0102900-00 | Rice | nucleus | 26.58 | 28.5 |
| Zm00001d025374_P001 | Maize | plastid | 32.43 | 27.07 |
| Os02t0539500-01 | Rice | nucleus | 32.88 | 26.55 |
| Zm00001d016748_P001 | Maize | nucleus | 33.33 | 25.78 |
| Zm00001d003743_P001 | Maize | nucleus | 35.14 | 24.76 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 36.49 | 24.62 |
| TraesCS2B01G314600.1 | Wheat | plastid | 35.59 | 24.01 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 35.59 | 24.01 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 34.23 | 23.46 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 19.82 | 22.56 |
| OQU81546 | Sorghum | nucleus | 33.78 | 21.31 |
| EES13183 | Sorghum | nucleus, plastid | 30.18 | 21.27 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 31.08 | 16.59 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821400 | ProteinID:AEE76132.1 | ArrayExpress:AT3G18690 | EnsemblPlantsGene:AT3G18690 | RefSeq:AT3G18690 |
| TAIR:AT3G18690 | RefSeq:AT3G18690-TAIR-G | EnsemblPlants:AT3G18690.1 | TAIR:AT3G18690.1 | EMBL:AY084330 | Unigene:At.69640 |
| ProteinID:BAB01795.1 | EMBL:BT024603 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009870 | GO:GO:0009987 | Symbol:MKS1 | RefSeq:NP_566616.1 |
| PFAM:PF05678 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR33143 | UniProt:Q8LGD5 | UniParc:UPI00000A2BDD | InterPro:VQ | SEG:seg |
Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
Coordinates
chr3:-:6429534..6430517
Molecular Weight (calculated)
23582.8 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.354
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.