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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000064.1-P
Bra000955.1-P
Bra005104.1-P
Bra017117.1-P
Bra018325.1-P
Bra021623.1-P
Bra022786.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G18690.1 Bra018325.1-P AT2G30250.1 15990873
AT3G18690.1 Bra021623.1-P AT2G30250.1 15990873
AT3G18690.1 Bra022786.1-P AT2G30250.1 15990873
AT3G18690.1 Bra018325.1-P AT2G30250.1 21203436
AT3G18690.1 Bra021623.1-P AT2G30250.1 21203436
AT3G18690.1 Bra022786.1-P AT2G30250.1 21203436
AT3G18690.1 Bra000064.1-P AT2G38470.1 15990873
AT3G18690.1 Bra005104.1-P AT2G38470.1 15990873
AT3G18690.1 Bra017117.1-P AT2G38470.1 15990873
AT3G18690.1 Bra000955.1-P AT4G01370.1 15990873
AT3G18690.1 Bra000955.1-P AT4G01370.1 21203436
AT3G18690.1 Bra000955.1-P AT4G01370.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92261 Canola nucleus 98.61 99.07
Bra037569.1-P Field mustard nucleus 75.46 75.12
Bra001716.1-P Field mustard nucleus 70.37 71.03
AT3G18690.1 Thale cress nucleus 65.74 63.96
KRH64076 Soybean nucleus 42.13 42.92
KRH43402 Soybean cytosol, mitochondrion, nucleus, plastid 38.89 42.42
KRH53873 Soybean nucleus 41.67 40.54
KRH59551 Soybean plastid 38.89 40.38
GSMUA_Achr10P... Banana nucleus 36.11 38.05
Solyc11g005720.1.1 Tomato nucleus 39.35 36.8
PGSC0003DMT400073800 Potato nucleus 38.89 36.68
GSMUA_Achr7P03200_001 Banana nucleus 34.26 34.1
GSMUA_Achr6P13020_001 Banana nucleus 36.57 33.91
Bra025892.1-P Field mustard nucleus 35.65 33.48
TraesCS5B01G026300.1 Wheat nucleus 37.5 33.33
HORVU5Hr1G007670.2 Barley nucleus 36.57 32.92
TraesCS5D01G034800.1 Wheat nucleus 37.04 32.79
TraesCS5A01G027100.1 Wheat nucleus 37.5 32.14
TraesCS7D01G323700.1 Wheat peroxisome 36.11 30.71
TraesCS7A01G326900.1 Wheat peroxisome 34.72 29.41
TraesCS7B01G227600.1 Wheat peroxisome 34.26 29.02
Os08t0102900-00 Rice nucleus 27.31 28.5
Zm00001d025374_P001 Maize plastid 33.8 27.44
Zm00001d016748_P001 Maize nucleus 35.65 26.83
Os02t0539500-01 Rice nucleus 33.33 26.18
Bra012276.1-P Field mustard plastid 21.3 25.7
Zm00001d003743_P001 Maize nucleus 37.04 25.4
TraesCS2B01G314600.1 Wheat plastid 36.57 24.01
TraesCS2A01G298100.1 Wheat mitochondrion 36.57 24.01
TraesCS2D01G296200.1 Wheat mitochondrion 36.11 23.71
Zm00001d034979_P001 Maize nucleus, plastid 35.19 23.46
HORVU0Hr1G004060.1 Barley cytosol, plastid 20.37 22.56
OQU81546 Sorghum nucleus 36.11 22.16
EES13183 Sorghum nucleus, plastid 30.56 20.95
Os04t0417600-00 Rice cytosol, mitochondrion, nucleus 31.02 16.11
Protein Annotations
EnsemblPlants:Bra022345.1EnsemblPlants:Bra022345.1-PEnsemblPlantsGene:Bra022345InterPro:VQPANTHER:PTHR33143PANTHER:PTHR33143:SF26
PFAM:PF05678SEG:segUniParc:UPI0002548071UniProt:M4E0P8MapMan:35.1:
Description
AT3G18690 (E=6e-069) MKS1 | MKS1 (MAP kinase substrate 1); protein binding
Coordinates
chrA05:+:18286118..18286768
Molecular Weight (calculated)
23065.1 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.362
Length
216 amino acids
Sequence
(BLAST)
001: MDPSDYLTGN NPSDQQNQKR QLQIYGPRPS PLSVHKDSHK IKKPPKHPVP PPQHHHRDQA PLYAPREPVV IYAVSPKVVH TTTSDFMNVV QRLTGISAGV
101: FHESGNGGDV SPAARLAATE NASPRGGKEP TAAAAKEETV EIATAMEEAA EFSGYAPGIL SPSPAMLPTA SAGIFSPGWF SPSGLMSPFI LYSPSYASLV
201: ASPTFADVFS SHIWDL
Best Arabidopsis Sequence Match ( AT3G18690.1 )
(BLAST)
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.