Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G049500.2 | |
| HORVU1Hr1G070250.2 | |
| HORVU3Hr1G088200.4 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G027100.1 | Wheat | nucleus | 77.08 | 73.41 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 72.08 | 71.19 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 72.08 | 70.9 |
| Os02t0539500-01 | Rice | nucleus | 58.75 | 51.27 |
| Zm00001d016748_P001 | Maize | nucleus | 55.0 | 45.99 |
| GSMUA_Achr10P... | Banana | nucleus | 36.67 | 42.93 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 31.25 | 37.88 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 30.42 | 37.44 |
| CDX75979 | Canola | nucleus | 32.92 | 37.26 |
| KRH59551 | Soybean | plastid | 32.08 | 37.02 |
| KRH53873 | Soybean | nucleus | 34.17 | 36.94 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 35.83 | 36.91 |
| CDY68488 | Canola | nucleus | 33.33 | 36.87 |
| CDX92261 | Canola | nucleus | 32.92 | 36.74 |
| Bra022345.1-P | Field mustard | nucleus | 32.92 | 36.57 |
| CDX99326 | Canola | nucleus | 32.5 | 36.45 |
| CDX82333 | Canola | nucleus | 32.5 | 36.45 |
| Bra001716.1-P | Field mustard | nucleus | 32.5 | 36.45 |
| CDY71738 | Canola | nucleus | 32.5 | 35.94 |
| KRH64076 | Soybean | nucleus | 31.67 | 35.85 |
| AT3G18690.1 | Thale cress | nucleus | 32.5 | 35.14 |
| Bra037569.1-P | Field mustard | nucleus | 31.25 | 34.56 |
| PGSC0003DMT400073800 | Potato | nucleus | 30.83 | 32.31 |
| Solyc11g005720.1.1 | Tomato | nucleus | 30.83 | 32.03 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G007670.2 | EnsemblPlantsGene:HORVU5Hr1G007670 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF1 | PFAM:PF05678 |
| SEG:seg | UniParc:UPI0002953CCB | UniProt:M0VNG5 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chrchr5H:+:15621333..15623492
Molecular Weight (calculated)
25439.4 Da
IEP (calculated)
9.163
GRAVY (calculated)
-0.297
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPPSSEEE RQSPRSRQLQ LQGPRPPRLS VSKDSHKIRK PPVVPLPHGH GARQLQAAPA NRHQQAQPRA PVIIYDASPK VIHTQPGEFL ALVQRLTGPG
101: APAHQCSAED HPSAVPVPPQ FQPPFSPAAR YAAIERSVRP LPPGPAPYSG SWLDIDGFAE VLGPGRPGIL SPVPSALPLA ASPGLFSPLP FDTGSLSWLN
201: DLSPFLASAS ASSPGGVLLA TPTMPSPGMM MRFFSDFPDL
101: APAHQCSAED HPSAVPVPPQ FQPPFSPAAR YAAIERSVRP LPPGPAPYSG SWLDIDGFAE VLGPGRPGIL SPVPSALPLA ASPGLFSPLP FDTGSLSWLN
201: DLSPFLASAS ASSPGGVLLA TPTMPSPGMM MRFFSDFPDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.