Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022345.1-P | Field mustard | nucleus | 99.07 | 98.61 |
| CDX99326 | Canola | nucleus | 96.28 | 96.73 |
| CDY68488 | Canola | nucleus | 79.07 | 78.34 |
| CDY71738 | Canola | nucleus | 78.6 | 77.88 |
| CDX75979 | Canola | nucleus | 71.16 | 72.17 |
| CDX82333 | Canola | nucleus | 70.7 | 71.03 |
| AT3G18690.1 | Thale cress | nucleus | 66.05 | 63.96 |
| KRH64076 | Soybean | nucleus | 42.33 | 42.92 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 39.07 | 42.42 |
| KRH53873 | Soybean | nucleus | 42.33 | 40.99 |
| KRH59551 | Soybean | plastid | 39.07 | 40.38 |
| GSMUA_Achr10P... | Banana | nucleus | 36.28 | 38.05 |
| Solyc11g005720.1.1 | Tomato | nucleus | 39.53 | 36.8 |
| PGSC0003DMT400073800 | Potato | nucleus | 39.07 | 36.68 |
| GSMUA_Achr7P03200_001 | Banana | nucleus | 34.42 | 34.1 |
| GSMUA_Achr6P13020_001 | Banana | nucleus | 36.74 | 33.91 |
| CDY04618 | Canola | nucleus | 35.81 | 33.48 |
| CDY50839 | Canola | nucleus | 35.81 | 33.48 |
| TraesCS5B01G026300.1 | Wheat | nucleus | 37.67 | 33.33 |
| HORVU5Hr1G007670.2 | Barley | nucleus | 36.74 | 32.92 |
| TraesCS5D01G034800.1 | Wheat | nucleus | 37.21 | 32.79 |
| TraesCS5A01G027100.1 | Wheat | nucleus | 37.67 | 32.14 |
| TraesCS7D01G323700.1 | Wheat | peroxisome | 36.28 | 30.71 |
| TraesCS7A01G326900.1 | Wheat | peroxisome | 34.88 | 29.41 |
| TraesCS7B01G227600.1 | Wheat | peroxisome | 34.42 | 29.02 |
| Os08t0102900-00 | Rice | nucleus | 27.44 | 28.5 |
| CDY61066 | Canola | nucleus | 30.7 | 28.21 |
| CDY00369 | Canola | nucleus | 30.23 | 27.78 |
| Zm00001d025374_P001 | Maize | plastid | 33.95 | 27.44 |
| Zm00001d016748_P001 | Maize | nucleus | 35.81 | 26.83 |
| Os02t0539500-01 | Rice | nucleus | 33.49 | 26.18 |
| Zm00001d003743_P001 | Maize | nucleus | 37.67 | 25.71 |
| TraesCS2A01G298100.1 | Wheat | mitochondrion | 36.74 | 24.01 |
| TraesCS2B01G314600.1 | Wheat | plastid | 36.74 | 24.01 |
| TraesCS2D01G296200.1 | Wheat | mitochondrion | 36.28 | 23.71 |
| Zm00001d034979_P001 | Maize | nucleus, plastid | 35.35 | 23.46 |
| HORVU0Hr1G004060.1 | Barley | cytosol, plastid | 20.47 | 22.56 |
| OQU81546 | Sorghum | nucleus | 36.28 | 22.16 |
| EES13183 | Sorghum | nucleus, plastid | 30.7 | 20.95 |
| Os04t0417600-00 | Rice | cytosol, mitochondrion, nucleus | 31.16 | 16.11 |
Protein Annotations
| EnsemblPlants:CDX92261 | EnsemblPlantsGene:GSBRNA2T00153981001 | InterPro:VQ | PANTHER:PTHR33143 | PFAM:PF05678 | ProteinID:CDX92261 |
| ProteinID:CDX92261.1 | SEG:seg | UniParc:UPI0004EE5CCC | MapMan:35.1 | : | : |
Description
BnaA05g21460D
Coordinates
chrLK031871:-:1131803..1132450
Molecular Weight (calculated)
22996.0 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.372
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSDYLTGN NPSDQQNQKR QLQIYGPRPS PLSVHKDSHK IKKPPKHPAP PPQHHHRDQA PLYAPREPVV IYAVSPKVVH TTTSDFMNVV QRLTGISAGV
101: FHESGNGGDV SPAARLAATE NASPRGGKEP TAAAKEETVE IAMAMEEAAE FSGYAPGILS PSPAMLPTAS AGIFSPGWFS PSGLMSPFIL YSPSYASLVA
201: SPTFADVFSS HIWDL
101: FHESGNGGDV SPAARLAATE NASPRGGKEP TAAAKEETVE IAMAMEEAAE FSGYAPGILS PSPAMLPTAS AGIFSPGWFS PSGLMSPFIL YSPSYASLVA
201: SPTFADVFSS HIWDL
001: MDPSEYFAGG NPSDQQNQKR QLQICGPRPS PLSVHKDSHK IKKPPKHPAP PPNRDQPPPY IPREPVVIYA VSPKVVHATA SEFMNVVQRL TGISSGVFLE
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
101: SGGGGDVSPA ARLASTENAS PRGGKEPAAR DETVEINTAM EEAAEFGGYA PGILSPSPAL LPTASTGIFS PMYHQGGMFS PAIPLGLFSP AGFMSPFRSP
201: GFTSLVASPT FADFFSHIWD QD
Arabidopsis Description
MKS1Protein MKS1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGD5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.