Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025892.1-P | Field mustard | nucleus | 99.57 | 99.57 |
| CDY04618 | Canola | nucleus | 94.78 | 94.78 |
| AT1G21326.1 | Thale cress | nucleus | 66.96 | 64.44 |
| CDY00369 | Canola | nucleus | 60.87 | 59.83 |
| CDY61066 | Canola | nucleus | 59.57 | 58.55 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 42.17 | 38.49 |
| KRH18125 | Soybean | nucleus | 38.7 | 37.08 |
| PGSC0003DMT400045282 | Potato | nucleus | 39.13 | 36.73 |
| KRH53420 | Soybean | nucleus | 39.57 | 36.55 |
| CDX75979 | Canola | nucleus | 33.04 | 35.85 |
| Solyc06g060470.1.1 | Tomato | nucleus | 37.39 | 35.83 |
| CDX92261 | Canola | nucleus | 33.48 | 35.81 |
| CDX99326 | Canola | nucleus | 33.04 | 35.51 |
| CDX82333 | Canola | nucleus | 33.04 | 35.51 |
| KRH64520 | Soybean | nucleus, plastid | 36.96 | 35.42 |
| CDY68488 | Canola | nucleus | 33.04 | 35.02 |
| KRH15991 | Soybean | nucleus | 36.09 | 35.02 |
| CDY71738 | Canola | nucleus | 32.61 | 34.56 |
| PGSC0003DMT400002024 | Potato | plastid | 40.43 | 33.7 |
Protein Annotations
| EnsemblPlants:CDY50839 | EnsemblPlantsGene:GSBRNA2T00097576001 | InterPro:VQ | PANTHER:PTHR33143 | PANTHER:PTHR33143:SF26 | PFAM:PF05678 |
| ProteinID:CDY50839 | ProteinID:CDY50839.1 | SEG:seg | UniParc:UPI0004EDFBD7 | UniProt:A0A078IN49 | MapMan:35.1 |
Description
BnaA10g28160DBnaA10g28160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN49]
Coordinates
chrLK032943:+:89926..90618
Molecular Weight (calculated)
25072.6 Da
IEP (calculated)
9.614
GRAVY (calculated)
-0.501
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNKSPRSKE ILGPRPTPLK IRKDSHKIIK KPPLAPQPLQ SQPPQLHEQK PSQLLPPRGP VIIYTVSPKI IHTHPNNFMT LVQRLTGKTS TPTIPSSSSP
101: YPLALDYTSA SRDTSAVFDA SRGSISPAAR YAAMEKANVS NELGFVGGIE STNQYYQHDH HQNRATERAG ILSPGPASLP QISPDFFSTV GGSDPQGFSS
201: FFNDFSSILQ ATPTIPSPSS MDLFTNFFDC
101: YPLALDYTSA SRDTSAVFDA SRGSISPAAR YAAMEKANVS NELGFVGGIE STNQYYQHDH HQNRATERAG ILSPGPASLP QISPDFFSTV GGSDPQGFSS
201: FFNDFSSILQ ATPTIPSPSS MDLFTNFFDC
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.