Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15991 | Soybean | nucleus | 75.0 | 75.95 |
| KRH53420 | Soybean | nucleus | 59.17 | 57.03 |
| KRH64520 | Soybean | nucleus, plastid | 48.33 | 48.33 |
| PGSC0003DMT400045282 | Potato | nucleus | 49.17 | 48.16 |
| Solyc06g060470.1.1 | Tomato | nucleus | 47.5 | 47.5 |
| KRH43402 | Soybean | cytosol, mitochondrion, nucleus, plastid | 38.33 | 46.46 |
| KRH59551 | Soybean | plastid | 39.58 | 45.67 |
| VIT_18s0166g00090.t01 | Wine grape | nucleus | 47.5 | 45.24 |
| KRH64076 | Soybean | nucleus | 36.25 | 41.04 |
| CDY04618 | Canola | nucleus | 38.33 | 40.0 |
| PGSC0003DMT400002024 | Potato | plastid | 45.83 | 39.86 |
| KRH53873 | Soybean | nucleus | 36.67 | 39.64 |
| CDY50839 | Canola | nucleus | 37.08 | 38.7 |
| Bra025892.1-P | Field mustard | nucleus | 37.08 | 38.7 |
| AT1G21326.1 | Thale cress | nucleus | 37.92 | 38.08 |
| Bra012276.1-P | Field mustard | plastid | 27.92 | 37.43 |
| CDY61066 | Canola | nucleus | 36.25 | 37.18 |
| CDY00369 | Canola | nucleus | 36.25 | 37.18 |
Protein Annotations
| EMBL:ACUP02008035 | EnsemblPlants:KRH18125 | EnsemblPlantsGene:GLYMA_13G039800 | EntrezGene:100809190 | InterPro:VQ | PANTHER:PTHR33143 |
| PANTHER:PTHR33143:SF26 | PFAM:PF05678 | ProteinID:KRH18125 | ProteinID:KRH18125.1 | SEG:seg | UniParc:UPI000233AF80 |
| UniProt:K7LY00 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:+:12310527..12311616
Molecular Weight (calculated)
25792.5 Da
IEP (calculated)
10.771
GRAVY (calculated)
-0.560
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSQDIPSGR SPKRQLQGPR PPPLRINKDS HKIKKKPPVA PPSSQPQPPL RQPVIIYTVS PKVIHTTPSD FMSLVQRLTS SSSSSSSSSS NKVSIDPLNG
101: NKGHGGGSGI VSPAGRYATI EMARTTTQST KQHPIENSDD VGGVDLVGHG VLLKRPNMFH GILSPGPSSS LSPIPSNFFS PPSIDPNMGS FYHDLSPILR
201: NNRNFMEGTT TTATFIMPSP SNFVSPRTPS IDLFNNFSDN
101: NKGHGGGSGI VSPAGRYATI EMARTTTQST KQHPIENSDD VGGVDLVGHG VLLKRPNMFH GILSPGPSSS LSPIPSNFFS PPSIDPNMGS FYHDLSPILR
201: NNRNFMEGTT TTATFIMPSP SNFVSPRTPS IDLFNNFSDN
001: MDNRSPRSRG ILGPRPIPLK VRGDSHKIIK KPPLAPPHPQ PQPPQTHQQE PSQSRPPPGP VIIYTVSPRI IHTHPNNFMT LVQRLTGKTS TSTTSSSYSS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
101: STSAPKDAST MVDTSHGLIS PAARFAVTEK ANISNELGTF VGGEGTMDQY YHYHHHHHHQ EQQHQNQGFE RPSFHHAGIL SPGPNSLPSV SPDFFSTIGP
201: TDPQGFSSFF NDFNSILQSS PSKIQSPSSM DLFNNFFDS
Arabidopsis Description
F16F4.1 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMP5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.